Factsheet for GSMUA_Achr6P18560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0089g01070.t01	Wine grape	cytosol	31.64	65.56
Zm00001d034796_P005	Maize	cytosol	56.03	59.71
KXG37171	Sorghum	cytosol	55.23	58.86
Os03t0842700-03	Rice	cytosol	22.52	57.93
TraesCS5B01G530300.1	Wheat	cytosol	53.35	56.86
TraesCS5D01G529100.1	Wheat	cytosol	53.08	56.41
TraesCS5B01G530100.1	Wheat	cytosol	52.81	56.29
Zm00001d047622_P002	Maize	cytosol	23.32	56.13
TraesCS4A01G343800.3	Wheat	cytosol	52.81	56.13
HORVU5Hr1G120090.3	Barley	cytosol	49.6	47.93
KRH62573	Soybean	endoplasmic reticulum, extracellular	49.87	46.97
Zm00001d007243_P001	Maize	endoplasmic reticulum	20.91	45.35
Zm00001d004146_P001	Maize	cytosol	31.1	43.28
GSMUA_Achr8P18180_001	Banana	cytosol	45.58	40.87
Zm00001d020119_P001	Maize	cytosol	13.14	37.12
Zm00001d046521_P001	Maize	nucleus	20.11	31.65
Zm00001d004675_P001	Maize	cytosol	18.23	31.05
CDY24606	Canola	cytosol, mitochondrion, nucleus	4.83	16.07

Protein Annotations

EnsemblPlants:GSMUA_Achr6P18560_001	EnsemblPlants:GSMUA_Achr6T18560_001	EnsemblPlantsGene:GSMUA_Achr6G18560_001	Gene3D:1.10.246.120	Gene3D:1.20.1050.80	InterPro:IPR003123
InterPro:IPR037191	InterPro:VPS9	InterPro:VPS9_dom_sf	ncoils:Coil	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63
PFAM:PF02204	PFscan:PS51205	SMART:SM00167	SUPFAM:SSF109993	UniParc:UPI000294D748	UniProt:M0T854
MapMan:22.8.3.1	:	:	:	:	:

Description

vacuolar sorting protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G18560_001]

Coordinates

chr6:-:12801769..12813251

Molecular Weight (calculated)

42912.4 Da

IEP (calculated)

6.195

GRAVY (calculated)

-0.346

Length

373 amino acids

Sequence
(BLAST)

001: MEPSHVSHPN FYDFLNRMRR PAAADLVRSI KSFVISFPFQ TSNAEHDGNK VQDFLAMMET TIKEHPLWAH ATYEEIDSAI EGLEKYIMTK LFTHTFASSS
101: EDAKLDLEIS EKNCLLQHFI KPDHLDVPRV FQNEASWLFA AKELQKINFF KAPRDKLLCI MNCCRIINNL LLDISMTTNH TPAGADDFLP ILIYVTIKAS
201: SLSTYFLPAN PPQLHSNLKF VQLYRKHSKL VSEVEYYLTN LISAKTFITN INASSLSMDE SEFHRNMQLA RLASEITVNE PSGTVQLSEG SPPIVRNKYI
301: YVEGNGYPFM EAEARDLRLE DVQQLLGLYK QVVTKYRKLS EALRQLSIDE NQLLDNHQRQ DMKEKIEQQL EQG

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.