CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034796_P005	Maize	cytosol	92.57	92.57
TraesCS5D01G529100.1	Wheat	cytosol	79.43	79.2
TraesCS4A01G343800.3	Wheat	cytosol	78.86	78.63
TraesCS5B01G530300.1	Wheat	cytosol	78.57	78.57
TraesCS5B01G530100.1	Wheat	cytosol	78.57	78.57
Os03t0842700-03	Rice	cytosol	31.71	76.55
Zm00001d047622_P002	Maize	cytosol	32.29	72.9
Zm00001d007243_P001	Maize	endoplasmic reticulum	35.43	72.09
VIT_18s0089g01070.t01	Wine grape	cytosol	34.29	66.67
HORVU5Hr1G120090.3	Barley	cytosol	70.57	63.99
Zm00001d004146_P001	Maize	cytosol	43.43	56.72
GSMUA_Achr6P18560_001	Banana	cytosol	58.86	55.23
Zm00001d020119_P001	Maize	cytosol	18.29	48.48
KRH62573	Soybean	endoplasmic reticulum, extracellular	50.29	44.44
Zm00001d004675_P001	Maize	cytosol	27.71	44.29
Zm00001d046521_P001	Maize	nucleus	29.14	43.04
OQU92877	Sorghum	cytosol	44.29	32.98
CDY24606	Canola	cytosol, mitochondrion, nucleus	4.29	13.39

Protein Annotations

Gene3D:1.10.246.120	Gene3D:1.20.1050.80	MapMan:22.8.3.1	UniProt:A0A1B6QGX3	InterPro:IPR003123	InterPro:IPR037191
EnsemblPlants:KXG37171	ProteinID:KXG37171	ProteinID:KXG37171.1	PFAM:PF02204	PFscan:PS51205	PANTHER:PTHR23101
PANTHER:PTHR23101:SF63	SMART:SM00167	EnsemblPlantsGene:SORBI_3001G017800	SUPFAM:SSF109993	UniParc:UPI00081ADF76	InterPro:VPS9
InterPro:VPS9_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:1512851..1514920

Molecular Weight (calculated)

39761.5 Da

IEP (calculated)

5.621

GRAVY (calculated)

-0.290

Length

350 amino acids

Sequence
(BLAST)

001: MESPTSTASR PDFYDFLDRM RRPAAADLFR SIKSFLVSFS FHAPNAEEDG CKVQAFFTEM ESAIRDHPLW ANATNQEIDH ALEGLEKYVM TKLFDRTFGT
101: STEDAVTDME ISEKIGLLQQ FVKPHHLDIP KILHNEASWL LAVKELQKVN SFKAPREKLL CIMSCCQVIN NLLLNISMSN DRTLSGADEF LPILIYITIK
201: ANPPQLHSNL KFVQLFRRET KLISEVEYYL TNLISAKMFI IDVNASSLSM EGSEFQKHME SARLATQVSV ASPSSSQGPP TSARANQEEI DMAGPRFPFM
301: DSETESLNPR EVKQMHDLYR QVVTRYTLLS KALRKLSIDE DQLINSVHDS

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.