CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0089g01070.t01	Wine grape	cytosol	31.06	68.33
Zm00001d047622_P002	Maize	cytosol	21.97	56.13
Os03t0842700-03	Rice	cytosol	19.95	54.48
Zm00001d034796_P005	Maize	cytosol	45.45	51.43
KXG37171	Sorghum	cytosol	44.44	50.29
GSMUA_Achr6P18560_001	Banana	cytosol	46.97	49.87
TraesCS5B01G530300.1	Wheat	cytosol	42.93	48.57
TraesCS5D01G529100.1	Wheat	cytosol	42.93	48.43
TraesCS5B01G530100.1	Wheat	cytosol	42.68	48.29
TraesCS4A01G343800.3	Wheat	cytosol	42.68	48.15
HORVU5Hr1G120090.3	Barley	cytosol	40.15	41.19
Zm00001d020119_P001	Maize	cytosol	13.13	39.39
Zm00001d004146_P001	Maize	cytosol	26.52	39.18
KRH64753	Soybean	cytosol	39.9	33.98
KRH53154	Soybean	cytosol	39.9	33.83
Zm00001d007243_P001	Maize	endoplasmic reticulum	14.65	33.72
Zm00001d004675_P001	Maize	cytosol	17.93	32.42
Zm00001d046521_P001	Maize	nucleus	18.94	31.65
CDY24606	Canola	cytosol, mitochondrion, nucleus	5.05	17.86

Protein Annotations

EMBL:ACUP02002310	EnsemblPlants:KRH62573	EnsemblPlantsGene:GLYMA_04G116900	Gene3D:1.10.246.120	Gene3D:1.20.1050.80	InterPro:IPR003123
InterPro:IPR037191	InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	PFAM:PF02204
PFscan:PS51205	ProteinID:KRH62573	ProteinID:KRH62573.1	SEG:seg	SMART:SM00167	SUPFAM:SSF109993
UniParc:UPI0002954272	UniProt:I1JVP8	MapMan:22.8.3.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:13696275..13700803

Molecular Weight (calculated)

44997.5 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.189

Length

396 amino acids

Sequence
(BLAST)

001: MLPLPLLQFQ SFLTWDSLNM NMDMEVSTSF HDFLYRMRHP ASLDLVRSIK SFIVSFSFHQ PKPENDGKRV QDFFVSMEAA IRDHSLWTTA SEEDIDCAMQ
101: GLEKYIMTKL FSRTFSASAE DAKIDNEISS KICLLQTFLK PEHLDIPPIL QNEALWLLAE KELLKINAFK APHEKLLSIM NCCRIINNLL LNAAMSEYVP
201: AGADGFLPVL IYVTIKANPP KLHSNLKFIK LYTRQAKLIS EAEYYFTNLV SAKTFIVDLN AKSLSMDEIK YKESMQAAKL TNKVTSELSA ACQMSQQETD
301: DSSCSKKMHN KLDDTGVLLH GSNYPYMEAK SKELTVGDVD MLLSDYKDLV AKYTILCKAI GCLSTAEREP LLRHLEMQGP ETLLNFTAPS DHHRHK

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.