Factsheet for Zm00001d007243_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

endoplasmic reticulum 4
extracellular 3
golgi 3
plasma membrane 3
vacuole 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034796_P005	Maize	cytosol	77.33	38.0
KXG37171	Sorghum	cytosol	72.09	35.43
TraesCS5D01G529100.1	Wheat	cytosol	66.28	32.48
TraesCS4A01G343800.3	Wheat	cytosol	65.7	32.19
TraesCS5B01G530300.1	Wheat	cytosol	64.53	31.71
TraesCS5B01G530100.1	Wheat	cytosol	64.53	31.71
HORVU5Hr1G120090.3	Barley	cytosol	62.21	27.72
GSMUA_Achr6P18560_001	Banana	cytosol	45.35	20.91
KRH62573	Soybean	endoplasmic reticulum, extracellular	33.72	14.65
CDY24606	Canola	cytosol, mitochondrion, nucleus	9.3	14.29
Zm00001d047863_P004	Maize	cytosol	30.23	10.26
Zm00001d004675_P001	Maize	cytosol	8.72	6.85
Zm00001d004146_P001	Maize	cytosol	10.47	6.72
Zm00001d046521_P001	Maize	nucleus	8.14	5.91
VIT_18s0089g01070.t01	Wine grape	cytosol	5.23	5.0
Zm00001d020119_P001	Maize	cytosol	2.91	3.79
Os03t0842700-03	Rice	cytosol	2.33	2.76
Zm00001d047622_P002	Maize	cytosol	2.33	2.58

Protein Annotations

EnsemblPlants:Zm00001d007243_P001	EnsemblPlants:Zm00001d007243_T001	EnsemblPlantsGene:Zm00001d007243	Gene3D:1.20.1050.80	InterPro:IPR003123	InterPro:IPR037191
InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	PFAM:PF02204	PFscan:PS51205
ProteinID:ONM26402.1	SUPFAM:SSF109993	UniParc:UPI0008458EBB	UniProt:A0A1D6F531	MapMan:22.8.3.1	:

Description

Vacuolar protein sorting-associated protein 9A

Coordinates

chr2:+:225535878..225537257

Molecular Weight (calculated)

19774.5 Da

IEP (calculated)

5.775

GRAVY (calculated)

-0.273

Length

172 amino acids

Sequence
(BLAST)

001: MRLAHAWVVN YIFSEVQHCL LLVNPPQLHS NLKFVHLFRR ETKLISEVEY YLTNLISAEM FIIDVSAHSL SMEESEFQKH MESARLATQV SVASPSSSQG
101: LPTYARANQE ETDMAGSRFP FMDSETESLT PGEVKQLHDL YKRVVTRYTL FSEALRKLSI DEDHLLNSMH DP

Best Arabidopsis Sequence Match ( AT3G19770.2 )
(BLAST)

001: MAAQKELQKI NMYKAPRDKL VCILNCCKVI NNLLLNASIA SNENAPGADE FLPVLIYVTI KANPPQLHSN LLYIQRYRRE SKLVGEAAYF FTNILSAESF
101: ISNIDAKSIS LDEAEFEKNM ESARARISGL DSQTYQTGHG SAPPPRDEST LQKTQSLNPK RENTLFQSKS SDSLSGTNEL LNINSETPMK KAESISDLEN
201: KGATLLKDTE PSKVFQEYPY IFASAGDLRI GDVEGLLNSY KQLVFKYVCL TKGLGDGTSL APSSSPLQAS SGFNTSKESE DHRRSSSDVQ MTKETDRSVD
301: DLIRALHGEG EDVNNLSDVK HEEYGAMLVE GKDEERDSKV QGEVDAKDIE LMKQIPKREG DNSSSRPAED EDVGSKQPVT EASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.