Factsheet for VIT_18s0089g01070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0842700-03	Rice	cytosol	47.22	58.62
Zm00001d047622_P002	Maize	cytosol	39.44	45.81
Zm00001d020119_P001	Maize	cytosol	27.78	37.88
Zm00001d034796_P005	Maize	cytosol	66.67	34.29
KXG37171	Sorghum	cytosol	66.67	34.29
Zm00001d004146_P001	Maize	cytosol	50.56	33.96
TraesCS5B01G530300.1	Wheat	cytosol	62.78	32.29
TraesCS5D01G529100.1	Wheat	cytosol	62.78	32.19
TraesCS5B01G530100.1	Wheat	cytosol	62.22	32.0
GSMUA_Achr6P18560_001	Banana	cytosol	65.56	31.64
TraesCS4A01G343800.3	Wheat	cytosol	61.67	31.62
KRH62573	Soybean	endoplasmic reticulum, extracellular	68.33	31.06
Zm00001d046521_P001	Maize	nucleus	40.0	30.38
Zm00001d004675_P001	Maize	cytosol	32.78	26.94
HORVU5Hr1G120090.3	Barley	cytosol	54.44	25.39
VIT_18s0001g04140.t01	Wine grape	cytosol	57.22	22.25
Zm00001d007243_P001	Maize	endoplasmic reticulum	5.0	5.23
CDY24606	Canola	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

ArrayExpress:VIT_18s0089g01070	EMBL:FN594956	EnsemblPlants:VIT_18s0089g01070.t01	EnsemblPlantsGene:VIT_18s0089g01070	Gene3D:1.10.246.120	Gene3D:1.20.1050.80
InterPro:IPR003123	InterPro:IPR037191	InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63
PFAM:PF02204	PFscan:PS51205	ProteinID:CCB44110	ProteinID:CCB44110.1	SUPFAM:SSF109993	UniParc:UPI00021091DA
UniProt:F6GVX5	MapMan:22.8.3.1	:	:	:	:

Description

No Description!

Coordinates

chr18:-:28940615..28948437

Molecular Weight (calculated)

20631.5 Da

IEP (calculated)

4.782

GRAVY (calculated)

-0.304

Length

180 amino acids

Sequence
(BLAST)

001: MDASSSQPLT FYDFLDRMRN PASLDLVRSI KSFIVSFSFY APSPENDGKR LQDFLLTMED SIRDHPLWVG ATEEEIDSAI EGLEKYVMTK LFSRTFAASP
101: EDAKADQEIS EKISLLQNFL RPEHLDIPAV LQNEASWLLA EKELQKVNAF KAPREKLLCI LNCCRVINNF NVRKSYSSWS

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.