Factsheet for Zm00001d004146_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047622_P002	Maize	cytosol	38.81	67.1
VIT_18s0089g01070.t01	Wine grape	cytosol	33.96	50.56
Os03t0842700-03	Rice	cytosol	27.24	50.34
Zm00001d020119_P001	Maize	cytosol	22.76	46.21
Zm00001d034796_P005	Maize	cytosol	59.33	45.43
KXG37171	Sorghum	cytosol	56.72	43.43
Zm00001d046521_P001	Maize	nucleus	36.19	40.93
Zm00001d004675_P001	Maize	cytosol	30.6	37.44
TraesCS4A01G343800.3	Wheat	cytosol	48.51	37.04
TraesCS5D01G529100.1	Wheat	cytosol	48.51	37.04
TraesCS5B01G530300.1	Wheat	cytosol	48.13	36.86
TraesCS5B01G530100.1	Wheat	cytosol	47.39	36.29
HORVU5Hr1G120090.3	Barley	cytosol	47.01	32.64
GSMUA_Achr6P18560_001	Banana	cytosol	43.28	31.1
KRH62573	Soybean	endoplasmic reticulum, extracellular	39.18	26.52
Zm00001d047863_P004	Maize	cytosol	36.57	19.33
Zm00001d007243_P001	Maize	endoplasmic reticulum	6.72	10.47
CDY24606	Canola	cytosol, mitochondrion, nucleus	2.99	7.14

Protein Annotations

EnsemblPlants:Zm00001d004146_P001	EnsemblPlants:Zm00001d004146_T001	EnsemblPlantsGene:Zm00001d004146	Gene3D:1.10.246.120	Gene3D:1.20.1050.80	InterPro:IPR003123
InterPro:IPR037191	InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	PFAM:PF02204
PFscan:PS51205	ProteinID:ONM18528.1	SEG:seg	SUPFAM:SSF109993	TMHMM:TMhelix	UniParc:UPI000844BACD
UniProt:A0A1D6EE74	MapMan:22.8.3.1	:	:	:	:

Description

Vacuolar protein sorting-associated protein 9A

Coordinates

chr2:-:86233344..86236604

Molecular Weight (calculated)

29614.6 Da

IEP (calculated)

5.346

GRAVY (calculated)

-0.038

Length

268 amino acids

Sequence
(BLAST)

001: MDKKEDGPGS QCGHTLTAVP LSAGSFLVSF SFHTANAEED DSKVQAFLAE MESSIRDPSL RANATDQEID HALEGLEKYV MTKLFDRTFG TSTEDAISDM
101: DISEKIGLLQ QFVKPHHSDI PKVLHNEPSW LLAVKELQNI NSFKAPREKL LCIMSCYQVI NNLLLNISMS NDRTLSGVDE FLPILICYYQ GKQLLVLATV
201: YSFYFFLLGT TAGSANVGKS VFISAMLRTM AYKELVAAAA QKYKPIQSDV PRTTLGPIQI EAYLGKGV

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.