Factsheet for Zm00001d047863_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

endoplasmic reticulum 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017793_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09320.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT5G09320.1	Zm00001d051589_P001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92877	Sorghum	cytosol	79.29	85.53
TraesCS4A01G088300.1	Wheat	cytosol	69.63	74.79
Os03t0262900-02	Rice	cytosol, plasma membrane	70.41	74.38
HORVU4Hr1G061320.1	Barley	cytosol	69.63	73.08
TraesCS4B01G215900.1	Wheat	cytosol	66.86	71.07
TraesCS4D01G216400.1	Wheat	cytosol	66.47	70.95
GSMUA_Achr8P18180_001	Banana	cytosol	54.24	66.11
CDY51691	Canola	cytosol	46.94	59.65
VIT_18s0001g04140.t01	Wine grape	cytosol	51.28	56.16
Zm00001d047622_P002	Maize	cytosol	17.16	56.13
Bra022450.1-P	Field mustard	cytosol	50.89	55.48
CDY24616	Canola	cytosol	50.89	55.36
KRH64753	Soybean	cytosol	48.72	53.12
KRH53154	Soybean	cytosol	48.72	52.89
AT5G09320.1	Thale cress	cytosol	45.36	52.63
Solyc01g096990.2.1	Tomato	cytosol	50.1	52.37
PGSC0003DMT400070782	Potato	cytosol	50.1	50.5
Bra009378.1-P	Field mustard	cytosol	49.11	48.63
AT3G19770.1	Thale cress	cytosol	48.72	47.5
Zm00001d034796_P005	Maize	cytosol	31.36	45.43
Zm00001d004146_P001	Maize	cytosol	19.33	36.57
CDY21574	Canola	cytosol	45.96	36.52
Zm00001d020119_P001	Maize	cytosol	9.47	36.36
CDX69912	Canola	cytosol	48.92	34.78
Zm00001d046521_P001	Maize	nucleus	16.17	34.6
Zm00001d004675_P001	Maize	cytosol	13.81	31.96
Zm00001d007243_P001	Maize	endoplasmic reticulum	10.26	30.23

Protein Annotations

EnsemblPlants:Zm00001d047863_P004	EnsemblPlants:Zm00001d047863_T004	EnsemblPlantsGene:Zm00001d047863	EntrezGene:100273143	Gene3D:1.10.246.120	Gene3D:1.20.1050.80
InterPro:IPR003123	InterPro:IPR037191	InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63
PFAM:PF02204	PFscan:PS51205	ProteinID:AQL07834.1	SEG:seg	SMART:SM00167	SUPFAM:SSF109993
UniParc:UPI0008446934	UniProt:A0A1D6PE50	MapMan:22.8.3.1	:	:	:

Description

Vacuolar protein sorting-associated protein 9A

Coordinates

chr9:-:143659557..143668321

Molecular Weight (calculated)

57158.1 Da

IEP (calculated)

4.390

GRAVY (calculated)

-0.448

Length

507 amino acids

Sequence
(BLAST)

001: MEGSADSFGS LTAPLAWHDF LERMRQPSAA EFVKSIKSFI VTFSNRAPDP EKDSTAIQEF LENMEGAFRA HTPWAGSSEE ELESAGEVIS LFCTLKYQVL
101: LMWLRIFVRT DGLEKYVMTK LFNRVFASVP EDVKSDEELF EKMSLLQQFV RPENLDIKPE YQNETSWLLA QKELQKINMY KAPRDKLACI LNCCKVINNL
201: LLNASIVSNE TPPGADEFLP VLIYVTIKAN PPQLHSNLLY IQRYRRQTRL VSEAQYFFTN ILSAESFIWN IDGESLSMNE LDFQRRMDSA RERMLGLSAD
301: SEYQDNQANP DVQDRTSQSL GANRNSDASL SLKDHVQGSG QDMRRDSDVT VSGKQAEQVQ SISELEKKGT AELLNEDDLN KKFQEYPFLF ARAGDLTIAD
401: VESLLNSYKH LVLRYVALAQ GMGVSPETTL TQNGQTSDLV VSEEPEILNS VVKDNENSAI INKNVDDVIS LNHHSEAVDT EASEQMNQRT AVDSSDDLEA
501: LGRPENA

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.