CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
KXG31677

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09320.1	EES05647	AT3G27960.1	21798944
AT5G09320.1	KXG31677	AT5G64780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047863_P004	Maize	cytosol	85.53	79.29
Os03t0262900-02	Rice	cytosol, plasma membrane	76.38	74.79
TraesCS4A01G088300.1	Wheat	cytosol	73.4	73.09
TraesCS4B01G215900.1	Wheat	cytosol	73.83	72.75
HORVU4Hr1G061320.1	Barley	cytosol	74.47	72.46
TraesCS4D01G216400.1	Wheat	cytosol	72.13	71.37
GSMUA_Achr8P18180_001	Banana	cytosol	59.79	67.55
CDY51691	Canola	cytosol	52.13	61.4
VIT_18s0001g04140.t01	Wine grape	cytosol	56.38	57.24
Bra022450.1-P	Field mustard	cytosol	55.96	56.56
CDY24616	Canola	cytosol	55.74	56.22
KRH53154	Soybean	cytosol	55.32	55.67
KRH64753	Soybean	cytosol	54.47	55.05
AT5G09320.1	Thale cress	cytosol	50.0	53.78
Solyc01g096990.2.1	Tomato	cytosol	54.89	53.2
PGSC0003DMT400070782	Potato	cytosol	54.47	50.89
Bra009378.1-P	Field mustard	cytosol	54.89	50.39
AT3G19770.1	Thale cress	cytosol	54.26	49.04
KXG37171	Sorghum	cytosol	32.98	44.29
CDY21574	Canola	cytosol	50.43	37.15
CDX69912	Canola	cytosol	54.47	35.9

Protein Annotations

Gene3D:1.10.246.120	Gene3D:1.20.1050.80	MapMan:22.8.3.1	UniProt:A0A1Z5SAD3	InterPro:IPR003123	InterPro:IPR037191
EnsemblPlants:OQU92877	ProteinID:OQU92877	ProteinID:OQU92877.1	PFAM:PF02204	PFscan:PS51205	PANTHER:PTHR23101
PANTHER:PTHR23101:SF63	SMART:SM00167	EnsemblPlantsGene:SORBI_3001G428800	SUPFAM:SSF109993	UniParc:UPI000B4257E7	InterPro:VPS9
InterPro:VPS9_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:70777755..70783576

Molecular Weight (calculated)

52723.4 Da

IEP (calculated)

4.393

GRAVY (calculated)

-0.551

Length

470 amino acids

Sequence
(BLAST)

001: MEGNADASST APLAWHDFLE RMRQPSAAEF VKSIKSFIVT FSNRAPDPEK DSAAVQEFLE NMEGAFRAHT PWAGSSEEEL ESAGEGLEKY VMTKLFNRVF
101: ASVPEDVKSD EELFEKMSLL QQFIRPENLD IKPEYQNETS WLLAQKELQK INMYKAPRDK LACILNCCKV INNLLLNASI VSNENPPGAD EFLPVLIYVT
201: IKANPPQLHS NLLYIQRYRR QTRLVSEAQY FFTNILSAES FIWNIDGESL SMNELDFQRK MDSARERLLG LSADSENQDS QANPDVQDWK SQNLKANRNS
301: DASLSLKDHV QGSGQDMRRD SDVTVSGKHV EQVQSVSDLE KKGAAELLNE DDLNKKFQEY PFLFARAGDL TVADVESLLN SYKQLVLRYV ALAQGMGVSP
401: ETTLARSGQT SDLVVSEDPD NLNSVVNDNE KKVDDVISEN HHSEAVDTEA SEQMTQKTAV DSSDDLKVSA

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.