CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51691	Canola	cytosol	74.25	86.72
CDY24606	Canola	cytosol, mitochondrion, nucleus	18.45	76.79
AT3G19770.1	Thale cress	cytosol	75.32	67.5
GSMUA_Achr8P18180_001	Banana	cytosol	53.0	59.38
VIT_18s0001g04140.t01	Wine grape	cytosol	58.15	58.53
OQU92877	Sorghum	cytosol	56.22	55.74
KRH64753	Soybean	cytosol	54.94	55.05
KRH53154	Soybean	cytosol	54.94	54.82
Os03t0262900-02	Rice	cytosol, plasma membrane	56.22	54.58
TraesCS4A01G088300.1	Wheat	cytosol	54.51	53.81
TraesCS4B01G215900.1	Wheat	cytosol	54.51	53.25
HORVU4Hr1G061320.1	Barley	cytosol	55.15	53.21
TraesCS4D01G216400.1	Wheat	cytosol	53.65	52.63
Solyc01g096990.2.1	Tomato	cytosol	54.08	51.96
Zm00001d047863_P004	Maize	cytosol	55.36	50.89
PGSC0003DMT400070782	Potato	cytosol	54.72	50.7
CDX69912	Canola	cytosol	70.17	45.86
CDY21574	Canola	cytosol	60.73	44.36

Protein Annotations

EnsemblPlants:CDY24616	EnsemblPlantsGene:GSBRNA2T00026978001	Gene3D:1.10.246.120	Gene3D:1.20.1050.80	InterPro:IPR003123	InterPro:IPR037191
InterPro:VPS9	InterPro:VPS9_dom_sf	ncoils:Coil	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	PFAM:PF02204
PFscan:PS51205	ProteinID:CDY24616	ProteinID:CDY24616.1	SEG:seg	SMART:SM00167	SUPFAM:SSF109993
UniParc:UPI0004EF4155	UniProt:A0A078GGY1	MapMan:22.8.3.1	:	:	:

Description

BnaC05g33000DBnaC05g33000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGY1]

Coordinates

chrLK032161:-:458283..460305

Molecular Weight (calculated)

51920.2 Da

IEP (calculated)

4.551

GRAVY (calculated)

-0.401

Length

466 amino acids

Sequence
(BLAST)

001: MENNTDVSIH DFLERMRKPS AGDLVKSIKS FIVSFLNNEP DPEKDSSAVQ DFFSKMEAAF RAHPLWSGCS EDELDSAGDG LEKYVMTKLF PRVFASNTED
101: VISDEKLFQK MSLVQQFISP EYLDIKPTFQ NETSWLLAQK ELQKINMYKA PRDKLVCVLN CCKVINNLLL NASIASNENT PGADEFLPVL IYVTIKANPP
201: QLHSNLLYVQ RYRRESKLVG EAAYFFTNIL SAESFISNID AKSLSMDQAE FEKNMESARA RISGLSIQST APPPPPRDES TVHKTQMLNP KRETTLFQSR
301: SSDSLSGTSD ILNANSEIPM KKAESVSDLE NKGAARLLKD TEASKIFQEY PYLFANAGDL RIGDVEDLLN SYKQLVFKYV CLSKELGDAA TTSLASSSTP
401: PLQALSGFDT SKEPEDHTMA SSDVKETDRS VDDLVRALQG VGEAVVDKVL DVKQEEYTSV LAEEQT

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.