Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51691 | Canola | cytosol | 59.23 | 77.19 |
| Bra022450.1-P | Field mustard | cytosol | 67.5 | 75.48 |
| CDY24616 | Canola | cytosol | 67.5 | 75.32 |
| AT5G09320.1 | Thale cress | cytosol | 62.31 | 74.14 |
| GSMUA_Achr8P18180_001 | Banana | cytosol | 47.5 | 59.38 |
| KRH64753 | Soybean | cytosol | 52.88 | 59.14 |
| VIT_18s0001g04140.t01 | Wine grape | cytosol | 51.92 | 58.32 |
| KRH53154 | Soybean | cytosol | 52.31 | 58.24 |
| OQU92877 | Sorghum | cytosol | 49.04 | 54.26 |
| Os03t0262900-02 | Rice | cytosol, plasma membrane | 49.62 | 53.75 |
| Solyc01g096990.2.1 | Tomato | cytosol | 49.23 | 52.78 |
| TraesCS4B01G215900.1 | Wheat | cytosol | 47.69 | 51.99 |
| TraesCS4A01G088300.1 | Wheat | cytosol | 47.12 | 51.91 |
| TraesCS4D01G216400.1 | Wheat | cytosol | 47.12 | 51.58 |
| HORVU4Hr1G061320.1 | Barley | cytosol | 47.69 | 51.35 |
| PGSC0003DMT400070782 | Potato | cytosol | 49.42 | 51.09 |
| Zm00001d047863_P004 | Maize | cytosol | 47.5 | 48.72 |
Protein Annotations
| Gene3D:1.10.246.120 | Gene3D:1.20.1050.80 | MapMan:22.8.3.1 | PDB:2EFC | PDB:2EFD | PDB:2EFE |
| PDB:2EFH | PDB:4G01 | EntrezGene:821514 | UniProt:A0A178VEC6 | ProteinID:AEE76284.1 | ArrayExpress:AT3G19770 |
| EnsemblPlantsGene:AT3G19770 | RefSeq:AT3G19770 | TAIR:AT3G19770 | RefSeq:AT3G19770-TAIR-G | EnsemblPlants:AT3G19770.1 | TAIR:AT3G19770.1 |
| Symbol:ATVPS9A | EMBL:AY045810 | EMBL:AY079338 | Unigene:At.22893 | ProteinID:BAB01291.1 | ncoils:Coil |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000919 | GO:GO:0003674 | GO:GO:0005089 | GO:GO:0005096 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0030234 | GO:GO:0042546 | GO:GO:0043547 | GO:GO:0048528 | GO:GO:0065009 | InterPro:IPR003123 |
| InterPro:IPR037191 | RefSeq:NP_566645.1 | ProteinID:OAP04589.1 | PFAM:PF02204 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51205 |
| PANTHER:PTHR23101 | PANTHER:PTHR23101:SF25 | UniProt:Q9LT31 | SMART:SM00167 | SUPFAM:SSF109993 | UniParc:UPI00000A940C |
| InterPro:VPS9 | InterPro:VPS9_dom_sf | SEG:seg | : | : | : |
Description
VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
Coordinates
chr3:+:6866717..6869501
Molecular Weight (calculated)
57900.7 Da
IEP (calculated)
4.536
GRAVY (calculated)
-0.568
Length
520 amino acids
Sequence
(BLAST)
(BLAST)
001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.