Factsheet for TraesCS4B01G215900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G116700.1
TraesCS3B01G135700.1
TraesCS3D01G118500.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09320.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT5G09320.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT5G09320.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT5G09320.1	TraesCS3A01G116700.1	AT5G64780.1	21798944
AT5G09320.1	TraesCS3B01G135700.1	AT5G64780.1	21798944
AT5G09320.1	TraesCS3D01G118500.1	AT5G64780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G216400.1	Wheat	cytosol	94.34	94.74
HORVU4Hr1G061320.1	Barley	cytosol	90.15	89.03
TraesCS4A01G088300.1	Wheat	cytosol	88.05	88.98
Os03t0262900-02	Rice	cytosol, plasma membrane	76.52	76.04
OQU92877	Sorghum	cytosol	72.75	73.83
GSMUA_Achr8P18180_001	Banana	cytosol	58.49	67.07
Zm00001d047863_P004	Maize	cytosol	71.07	66.86
VIT_18s0001g04140.t01	Wine grape	cytosol	55.77	57.45
CDY51691	Canola	cytosol	48.01	57.39
CDY24616	Canola	cytosol	53.25	54.51
Bra022450.1-P	Field mustard	cytosol	53.04	54.41
AT5G09320.1	Thale cress	cytosol	48.85	53.32
KRH53154	Soybean	cytosol	51.78	52.89
KRH64753	Soybean	cytosol	50.94	52.26
Solyc01g096990.2.1	Tomato	cytosol	52.83	51.96
PGSC0003DMT400070782	Potato	cytosol	53.46	50.7
Bra009378.1-P	Field mustard	cytosol	51.36	47.85
AT3G19770.1	Thale cress	cytosol	51.99	47.69
TraesCS5B01G530300.1	Wheat	cytosol	31.45	42.86
TraesCS5B01G530100.1	Wheat	cytosol	31.24	42.57
CDY21574	Canola	cytosol	47.59	35.58
CDX69912	Canola	cytosol	51.15	34.22

Protein Annotations

EnsemblPlants:TraesCS4B01G215900.1	EnsemblPlantsGene:TraesCS4B01G215900	Gene3D:1.10.246.120	Gene3D:1.20.1050.80	InterPro:IPR003123	InterPro:IPR037191
InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	PFAM:PF02204	PFscan:PS51205
SEG:seg	SMART:SM00167	SUPFAM:SSF109993	MapMan:22.8.3.1	:	:

Description

No Description!

Coordinates

chr4B:-:455618576..455623520

Molecular Weight (calculated)

53783.1 Da

IEP (calculated)

4.527

GRAVY (calculated)

-0.570

Length

477 amino acids

Sequence
(BLAST)

001: MEGGADAFGS STAPLAWHDF LERMRQPSAA EFVKSIKGFI MMFSNREPDP ERDSAAVQEF LENMEGAFRA HTPWAGSSEE ELESAGEGLE KYVMTKLYNR
101: VFASVPEDVK SDEELFEKIS LLQQFIRPEN LDIKPEYQNE TSWLLAQKEL QKINMYKAPR DKLACILNCC KVINNLLMNA SHMSHDNPPG ADEFLPVLIY
201: VTIKANPPQL HSNLLYIQRY RCQSRLVSEA QYFFTNLLSA ESFIWNIEAE SLSMDERDFQ KKMDLARERL LGLSVSSENQ ENQTNLYVGE HRSQALKASG
301: NSEVNLHLKD HVQGPVQDMK RESDVSSKSV ERVQSISDIE KKGATELVKD DDLSKIFQEY PFLFARAGDL TVADVDNLLN SYKQLVLKYV ALSKGMGVTP
401: ETPLVRSKQT APDLQISEEP ENVKNVVNSC DSTEESSKTH EDIKNEIPDS EVSNISTQQA AVDPSGDQKT LKDESSD

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.