Factsheet for PGSC0003DMT400070782

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09320.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT5G09320.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT5G09320.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT5G09320.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT5G09320.1	PGSC0003DMT400069515	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096990.2.1	Tomato	cytosol	82.31	85.36
GSMUA_Achr8P18180_001	Banana	cytosol	51.29	62.02
VIT_18s0001g04140.t01	Wine grape	cytosol	54.27	58.96
KRH64753	Soybean	cytosol	54.47	58.92
KRH53154	Soybean	cytosol	54.27	58.46
CDY51691	Canola	cytosol	46.32	58.4
Bra022450.1-P	Field mustard	cytosol	51.89	56.13
CDY24616	Canola	cytosol	50.7	54.72
OQU92877	Sorghum	cytosol	50.89	54.47
HORVU4Hr1G061320.1	Barley	cytosol	51.69	53.83
TraesCS4A01G088300.1	Wheat	cytosol	50.5	53.81
TraesCS4B01G215900.1	Wheat	cytosol	50.7	53.46
Os03t0262900-02	Rice	cytosol, plasma membrane	50.7	53.12
AT5G09320.1	Thale cress	cytosol	45.73	52.63
TraesCS4D01G216400.1	Wheat	cytosol	49.7	52.63
Zm00001d047863_P004	Maize	cytosol	50.5	50.1
AT3G19770.1	Thale cress	cytosol	51.09	49.42
Bra009378.1-P	Field mustard	cytosol	48.91	48.05
CDY21574	Canola	cytosol	45.53	35.89
CDX69912	Canola	cytosol	49.3	34.78

Protein Annotations

Gene3D:1.10.246.120	Gene3D:1.20.1050.80	EntrezGene:102601378	MapMan:22.8.3.1	InterPro:IPR003123	InterPro:IPR037191
UniProt:M1CMP4	PFAM:PF02204	EnsemblPlantsGene:PGSC0003DMG400027521	PGSC:PGSC0003DMG400027521	EnsemblPlants:PGSC0003DMT400070782	PFscan:PS51205
PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	SMART:SM00167	SUPFAM:SSF109993	UniParc:UPI000294DE4D	InterPro:VPS9
InterPro:VPS9_dom_sf	RefSeq:XP_006347715.1	SEG:seg	:	:	:

Description

Vacuolar protein sorting-associated protein VPS9 [Source:PGSC_GENE;Acc:PGSC0003DMG400027521]

Coordinates

chr1:+:74757579..74762992

Molecular Weight (calculated)

56103.2 Da

IEP (calculated)

4.274

GRAVY (calculated)

-0.595

Length

503 amino acids

Sequence
(BLAST)

001: MENSDVLGSS TAPLTWHDFL QRMRDPTAAD FVKSIKSFIV SFLNNAPDAE RDSAAVQEFL GNMETAFRAH SLWAGCSEEE LESAGEGLEK YVMTKLFTRT
101: FASLPEDVKV DEQLHEKIAL IQQFVRPENL DIKPIFQNES SWLLAQKELQ KINMYRAPRD KLVCILNCCK VINNLLTSVS AKDNPPGADD FLPVLIYVTV
201: KANPPQLHSN LLYIQRFRRQ TRLVSEAAYF FTNILSAESF ISNIDAQALS MDETEFETNM ESARALLSGL SADNNVLDQN DQNSGPVPGA DTSDAKQSFR
301: SNRPPHPATQ PNFSVASTET NIKNEDQYAK SQSSMEKIPS LSDLENRGAS MLIKEDSISQ VFQSFPYLYS QAGDLTVGDI EELLTNYKRL VIKYVCLAKG
401: SGIDNPSPPL PNNEGQTQHP EFEFNTESEA ASAGEPIDET QKDKPIDETQ KDEPIDETQK DEPIDDTQKD RPVDSSLLTK SLESDESKLK ENEELSSKGE
501: EGS

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.