Factsheet for Bra022450.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51691	Canola	cytosol	77.85	90.73
AT3G19770.1	Thale cress	cytosol	75.48	67.5
Bra009378.1-P	Field mustard	cytosol	70.32	63.87
GSMUA_Achr8P18180_001	Banana	cytosol	54.19	60.58
VIT_18s0001g04140.t01	Wine grape	cytosol	57.63	57.88
KRH64753	Soybean	cytosol	56.56	56.56
KRH53154	Soybean	cytosol	56.77	56.53
OQU92877	Sorghum	cytosol	56.56	55.96
Os03t0262900-02	Rice	cytosol, plasma membrane	56.77	55.0
TraesCS4A01G088300.1	Wheat	cytosol	54.41	53.6
TraesCS4B01G215900.1	Wheat	cytosol	54.41	53.04
TraesCS4D01G216400.1	Wheat	cytosol	53.76	52.63
Solyc01g096990.2.1	Tomato	cytosol	54.84	52.58
HORVU4Hr1G061320.1	Barley	cytosol	54.41	52.38
PGSC0003DMT400070782	Potato	cytosol	56.13	51.89
Zm00001d047863_P004	Maize	cytosol	55.48	50.89
Bra009377.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	8.82	16.08

Protein Annotations

Gene3D:1.10.246.120	Gene3D:1.20.1050.80	MapMan:22.8.3.1	EnsemblPlantsGene:Bra022450	EnsemblPlants:Bra022450.1	EnsemblPlants:Bra022450.1-P
ncoils:Coil	GO:GO:0000003	GO:GO:0000919	GO:GO:0003674	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0042546	GO:GO:0048528
GO:GO:0065009	InterPro:IPR003123	InterPro:IPR037191	UniProt:M4E103	PFAM:PF02204	PFscan:PS51205
PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	SMART:SM00167	SUPFAM:SSF109993	UniParc:UPI0002547DA6	InterPro:VPS9
InterPro:VPS9_dom_sf	SEG:seg	:	:	:	:

Description

AT3G19770 (E=1e-190) ATVPS9A, VPS9A | VPS9A; Rho guanyl-nucleotide exchange factor

Coordinates

chrA05:-:17577395..17579296

Molecular Weight (calculated)

51891.0 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.415

Length

465 amino acids

Sequence
(BLAST)

001: MENNTDVSIH DFLERMRKPS AGDLVKSIKS FIVSFLNNEP DPEKDSAAVQ DFFSKMEAAF RAHPLWSGCS EDELDSAGDG LEKYVMTKLF PRVFASNTED
101: VISDEKLFQK MSLVQQFISP EYLDIKPTFQ NETSWLLAQK ELQKINMYKA PRDKLVCVLN CCKVINNLLL NASIASNENT PGADEFLPVL IYVTIKANPP
201: QLHSNLLYIQ RYRRESKLVS EAAYFFTNIL SAESFISNID AKSLSMEEAE FEKNMESARA RISGLSSQPT APSPPRDEST VHKTQMLNPK RETTLFQSRS
301: SDSLSGTSDI LNANSEIPVK KVESVSDLEN KGASRLLKDT EANKIFQEYP YLFANAGDLR IGDVESLLNS YKQLVFKYVC LSKGLGDAAT TSLASSSPPL
401: QALSGFDTAK EPEDDHTTLS SDVRETDRSV DDLVRALQSE GEAVLDKVLD VKQEEYSTVL AEEQT

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.