CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH16959
KRH53667
KRH56614
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09320.1	KRG93305	AT3G27960.1	21798944
AT5G09320.1	KRH56614	AT3G27960.1	21798944
AT5G09320.1	KRH16959	AT3G49580.1	21798944
AT5G09320.1	KRH53667	AT3G49580.1	21798944
AT5G09320.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64753	Soybean	cytosol	83.51	83.87
CDY51691	Canola	cytosol	52.03	60.9
GSMUA_Achr8P18180_001	Banana	cytosol	54.18	60.82
VIT_18s0001g04140.t01	Wine grape	cytosol	60.17	60.69
Solyc01g096990.2.1	Tomato	cytosol	59.1	56.91
Bra022450.1-P	Field mustard	cytosol	56.53	56.77
AT5G09320.1	Thale cress	cytosol	51.82	55.38
OQU92877	Sorghum	cytosol	55.67	55.32
CDY24616	Canola	cytosol	54.82	54.94
PGSC0003DMT400070782	Potato	cytosol	58.46	54.27
TraesCS4A01G088300.1	Wheat	cytosol	53.32	52.75
Os03t0262900-02	Rice	cytosol, plasma membrane	53.96	52.5
AT3G19770.1	Thale cress	cytosol	58.24	52.31
TraesCS4B01G215900.1	Wheat	cytosol	52.89	51.78
Bra009378.1-P	Field mustard	cytosol	56.32	51.37
HORVU4Hr1G061320.1	Barley	cytosol	52.68	50.93
TraesCS4D01G216400.1	Wheat	cytosol	51.61	50.74
Zm00001d047863_P004	Maize	cytosol	52.89	48.72
KRH62573	Soybean	endoplasmic reticulum, extracellular	33.83	39.9
CDY21574	Canola	cytosol	50.54	36.99
CDX69912	Canola	cytosol	56.1	36.75

Protein Annotations

Gene3D:1.10.246.120	Gene3D:1.20.1050.80	EntrezGene:100810958	MapMan:22.8.3.1	EMBL:ACUP02003451	EnsemblPlantsGene:GLYMA_06G108200
UniProt:I1KA37	InterPro:IPR003123	InterPro:IPR037191	EnsemblPlants:KRH53154	ProteinID:KRH53154	ProteinID:KRH53154.1
PFAM:PF02204	PFscan:PS51205	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	SMART:SM00167	SUPFAM:SSF109993
UniParc:UPI0002339734	InterPro:VPS9	InterPro:VPS9_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:8696007..8705669

Molecular Weight (calculated)

51780.7 Da

IEP (calculated)

4.343

GRAVY (calculated)

-0.430

Length

467 amino acids

Sequence
(BLAST)

001: MENADVFLGL HDFLERMRQP SAAEFVKAIK SFIVSFSNNA PDPDRDSAAV QAFLAKMEAD FRAHPLWAGC SEEELESAGE GLEKYVMTKL FARVFASLPD
101: DVKFDDQLSE KMALIQQFIR PENLDIKPVF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCRVISNLL LNASVASREN PPGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRFRHQSRLV AEAAYYFTNM LSAESFISNI DAKAISMEEA EFDGNMEFAR AMLSGISADT QDPGSPYQND GQHPRAEPTK HKALNDNNDP
301: ALRTPSSVAK SESKKVTFAN ESLITKVPSL SDLENKGASM ILKEDKLNEV FGEFPYLFAS VGDLMVGDVE DLLNNYKQLV FKYVSLSKGL GISPTSLPPS
401: NSQNNSEDHA ETTIDSSDNG PLDDNSKSEE SIDTTDDSSD KVTLEEQKIE SDLPKDDLVA PEGDPPS

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.