Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 52.14 | 50.83 |
| KRH64261 | Soybean | nucleus | 52.14 | 50.41 |
| Solyc03g096780.1.1 | Tomato | nucleus | 44.44 | 46.02 |
| PGSC0003DMT400001474 | Potato | plastid | 43.59 | 43.59 |
| PGSC0003DMT400001476 | Potato | plastid | 41.03 | 42.86 |
| PGSC0003DMT400069515 | Potato | cytosol | 41.03 | 42.48 |
| PGSC0003DMT400001475 | Potato | plastid | 42.73 | 42.37 |
| Solyc06g072990.1.1 | Tomato | cytosol, plastid | 41.03 | 42.11 |
| Solyc03g096760.1.1 | Tomato | plastid | 40.17 | 41.96 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 33.33 | 41.94 |
| Bra017974.1-P | Field mustard | cytosol | 30.77 | 41.86 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 48.72 | 41.61 |
| Bra017975.1-P | Field mustard | cytosol | 34.19 | 41.24 |
| AT3G49570.1 | Thale cress | cytosol | 33.33 | 40.21 |
| CDY08146 | Canola | cytosol | 33.33 | 40.21 |
| Bra020466.1-P | Field mustard | nucleus | 33.33 | 40.21 |
| Solyc03g096770.1.1 | Tomato | nucleus | 39.32 | 40.0 |
| CDY69515 | Canola | cytosol, nucleus, plastid | 31.62 | 39.78 |
| Bra009783.1-P | Field mustard | cytosol, nucleus, plastid | 31.62 | 39.78 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 32.48 | 39.18 |
| CDY05402 | Canola | nucleus | 32.48 | 39.18 |
| AT5G24655.1 | Thale cress | cytosol | 30.77 | 39.13 |
| CDY08148 | Canola | cytosol | 29.91 | 37.63 |
| AT5G24660.1 | Thale cress | cytosol, nucleus, plastid | 29.91 | 37.23 |
| AT3G49580.1 | Thale cress | cytosol, nucleus, plastid | 28.21 | 35.11 |
Protein Annotations
| EMBL:ACUP02009034 | EnsemblPlants:KRH16959 | EnsemblPlantsGene:GLYMA_14G188300 | EntrezGene:100804573 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0033554 | ncoils:Coil | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | ProteinID:KRH16959 |
| ProteinID:KRH16959.1 | SEG:seg | UniParc:UPI000233AB2E | UniProt:I1MB59 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr14:+:45307250..45307669
Molecular Weight (calculated)
13450.0 Da
IEP (calculated)
5.312
GRAVY (calculated)
-0.790
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMGIGDKKK KTNTRECETT SSLELQLKKR NEELEEELSQ SKEREEHVRR QLRAALDRLT VAEEAEERLC AQLGDLEAEA LQQAREYHAR IVSLVDQLSQ
101: AHSLLLNTPI PLHSRCD
101: AHSLLLNTPI PLHSRCD
1: MGKGGGYVTV AAEEVEELRR RNGELEREME EMKKEMVQLW RRTVVAEEAE ERLCSQLAEL EVESLDQARD YHSRIVFLMD QISRLSSSSL EVVVTNS
Arabidopsis Description
LSU3Protein RESPONSE TO LOW SULFUR 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.