CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 3
endoplasmic reticulum 3
extracellular 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05698
KRH10202
KRH15345
KRH23133
KRH23980
KRH70714
KRH74848

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37560.1	KRH70714	AT1G26840.1	16179646
AT2G37560.1	KRH74848	AT1G26840.1	16179646
AT2G37560.1	KRH05698	AT2G37560.1	16179646
AT2G37560.1	KRH15345	AT2G37560.1	16179646
AT2G37560.1	KRH10202	AT4G12620.1	16179646
AT2G37560.1	KRH23133	AT4G12620.1	16179646
AT2G37560.1	KRH23980	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15345	Soybean	nucleus	93.15	74.32
PGSC0003DMT400069464	Potato	nucleus	71.92	57.85
Solyc06g073510.2.1	Tomato	nucleus	71.23	57.3
VIT_18s0001g10740.t01	Wine grape	nucleus	58.22	53.97
Bra005184.1-P	Field mustard	nucleus	66.1	53.17
AT2G37560.1	Thale cress	nucleus	65.75	52.89
CDY70246	Canola	nucleus	65.75	52.89
CDX74950	Canola	nucleus	65.07	52.34
TraesCS4A01G003800.1	Wheat	nucleus	64.04	49.08
Os03t0184700-01	Rice	nucleus	63.7	49.08
TraesCS4D01G299900.1	Wheat	nucleus	63.7	48.82
Zm00001d017423_P001	Maize	nucleus	63.01	48.81
TraesCS4B01G301600.1	Wheat	nucleus	63.01	48.42
EER92739	Sorghum	nucleus	62.33	48.4
EER93232	Sorghum	nucleus	62.33	48.28
GSMUA_Achr10P...	Banana	nucleus	50.34	47.88

Protein Annotations

MapMan:13.2.1.1.2	EMBL:ACUP02010773	EnsemblPlantsGene:GLYMA_17G243200	GO:GO:0000808	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003688	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:K7MNQ5	EnsemblPlants:KRH05698	ProteinID:KRH05698
ProteinID:KRH05698.1	InterPro:ORC2	PFAM:PF04084	PANTHER:PTHR14052	UniParc:UPI0002960F33	:

Description

hypothetical protein

Coordinates

chr17:-:39914327..39916903

Molecular Weight (calculated)

33082.9 Da

IEP (calculated)

6.581

GRAVY (calculated)

0.043

Length

292 amino acids

Sequence
(BLAST)

001: MYPEWFFALR NGFGLLMYGF GSKKVLIEDF ASTALTEYSV VVINGYLQTI NLKQVVIALA EILWEQVKTK QRVSYRDLPK SQQSFNSKSM EDLLTFLDQA
101: EIEAGAFFVC VVIHNIDGSG LRDSETQQYL ARLAACAQIR VVASIDHVNA PLFWDKNMAH TQFNWCWYHV PTFAPYKVEG MFYPMILAHG SASQTVKTAT
201: IVLSSLTRNA QSVFKVLAEH QLSHPDEGMP ISDLYSVCRE RFLVSSQITL NSHLTEFKDH ELVKIKKHSD GQDCLHIPLT AEALQKVVLE II

Best Arabidopsis Sequence Match ( AT2G37560.1 )
(BLAST)

001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ

Arabidopsis Description

ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.