Factsheet for VIT_18s0001g10740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02290.t01
VIT_06s0004g00530.t01
VIT_06s0004g02050.t01
VIT_13s0175g00030.t01
VIT_16s0039g01430.t01
VIT_16s0039g01440.t01
VIT_18s0001g10740.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37560.1	VIT_01s0026g02290.t01	AT1G26840.1	16179646
AT2G37560.1	VIT_18s0001g10740.t01	AT2G37560.1	16179646
AT2G37560.1	VIT_06s0004g00530.t01	AT4G12620.1	16179646
AT2G37560.1	VIT_06s0004g02050.t01	AT4G12620.1	16179646
AT2G37560.1	VIT_13s0175g00030.t01	AT4G12620.1	16179646
AT2G37560.1	VIT_16s0039g01430.t01	AT5G16690.1	16179646
AT2G37560.1	VIT_16s0039g01440.t01	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	64.13	65.8
Solyc06g073510.2.1	Tomato	nucleus	69.84	60.61
PGSC0003DMT400069464	Potato	nucleus	69.52	60.33
Bra005184.1-P	Field mustard	nucleus	67.3	58.4
CDX74950	Canola	nucleus	67.3	58.4
KRH05698	Soybean	endoplasmic reticulum, extracellular	53.97	58.22
KRH15345	Soybean	nucleus	67.3	57.92
CDY70246	Canola	nucleus	66.35	57.58
AT2G37560.1	Thale cress	nucleus	63.17	54.82
TraesCS4A01G003800.1	Wheat	nucleus	59.68	49.34
EER93232	Sorghum	nucleus	59.05	49.34
TraesCS4D01G299900.1	Wheat	nucleus	59.37	49.08
Os03t0184700-01	Rice	nucleus	59.05	49.08
TraesCS4B01G301600.1	Wheat	nucleus	59.05	48.95
Zm00001d017423_P001	Maize	nucleus	58.41	48.81
EER92739	Sorghum	nucleus	57.78	48.4

Protein Annotations

EntrezGene:100253929	wikigene:100253929	MapMan:13.2.1.1.2	ProteinID:CBI19537	ProteinID:CBI19537.3	UniProt:E0CP80
EMBL:FN595227	GO:GO:0000808	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003688
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EntrezGene:LOC100253929	wikigene:LOC100253929	InterPro:ORC2	PFAM:PF04084	PANTHER:PTHR14052
UniParc:UPI0001BE1383	ArrayExpress:VIT_18s0001g10740	EnsemblPlantsGene:VIT_18s0001g10740	EnsemblPlants:VIT_18s0001g10740.t01	RefSeq:XP_002282636	RefSeq:XP_002282636.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:9040293..9044410

Molecular Weight (calculated)

35168.8 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.224

Length

315 amino acids

Sequence
(BLAST)

001: MEGNYGEDEE FGFARNYFIA KELGGSGKKS SRKLSDIELV DEQELRAAAR SIESKHEKEI GSLLNSYKSL YPKWVFELRC GFGLLMYGFG SKKALIEDFA
101: STALTECAVL VINGYLQSIN IKQAVTAIAE ALWDQLKTRR TPSGDFPKVQ QPFNSRSMDD LLAFMDGSHS EKNDCFVCVV IHNIDGPGLR DSDTQQYLAR
201: VAACSHIRMV ASIDHVNAPL LWDKKMVHTQ FNWCWYHVPT FVPYKAEGIF YPLILAHGGT AQSAKTAAIV LQSLTPNAQS VFKVLAEHQL AHPDEEGKDA
301: CQQFVQYLSR ALSGE

Best Arabidopsis Sequence Match ( AT2G37560.1 )
(BLAST)

001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ

Arabidopsis Description

ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.