CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92739
EER93232
EER99752
EES17403
OQU75979

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37560.1	EER99752	AT1G26840.1	16179646
AT2G37560.1	EER92739	AT2G37560.1	16179646
AT2G37560.1	EER93232	AT2G37560.1	16179646
AT2G37560.1	OQU75979	AT4G12620.1	16179646
AT2G37560.1	EES17403	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92739	Sorghum	nucleus	95.76	96.01
Zm00001d017423_P001	Maize	nucleus	93.37	93.37
TraesCS4D01G299900.1	Wheat	nucleus	90.72	89.76
TraesCS4A01G003800.1	Wheat	nucleus	90.45	89.5
TraesCS4B01G301600.1	Wheat	nucleus	90.19	89.47
Os03t0184700-01	Rice	nucleus	87.8	87.34
GSMUA_Achr10P...	Banana	nucleus	53.32	65.47
Bra005184.1-P	Field mustard	nucleus	60.21	62.53
CDX74950	Canola	nucleus	60.21	62.53
KRH05698	Soybean	endoplasmic reticulum, extracellular	48.28	62.33
CDY70246	Canola	nucleus	59.95	62.26
Solyc06g073510.2.1	Tomato	nucleus	59.95	62.26
PGSC0003DMT400069464	Potato	nucleus	59.68	61.98
AT2G37560.1	Thale cress	nucleus	59.42	61.71
KRH15345	Soybean	nucleus	58.09	59.84
VIT_18s0001g10740.t01	Wine grape	nucleus	49.34	59.05

Protein Annotations

MapMan:13.2.1.1.2	EntrezGene:8057094	UniProt:C5WW25	EnsemblPlants:EER93232	ProteinID:EER93232	ProteinID:EER93232.1
GO:GO:0000808	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003688	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:ORC2	PFAM:PF04084	PANTHER:PTHR14052	EnsemblPlantsGene:SORBI_3001G043900	UniParc:UPI0001A82A65	RefSeq:XP_002466234.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:3286861..3289833

Molecular Weight (calculated)

42364.6 Da

IEP (calculated)

6.600

GRAVY (calculated)

-0.313

Length

377 amino acids

Sequence
(BLAST)

001: MTPRGGRAAA SSGSEDEEEE AGFSRSYFLA KEKEPSSGKK RARAAAGKLS DLNLVDEQVL RASLAEIPPK HEEEVEALTR SYKDQYCNWL FELRCGFGLL
101: MYGFGSKKQL LEDFASATLT DFTVIVINGY LPSINLKQVI ATIAEMFWDQ TKAKRKRQPG TRSQLSQQFP SQSTEDIISF LMRQTSDDVD DPVCLLIHNV
201: DGPALRDAES QQCLAQISCC PQIRIVASID HVNAPLLWDK KMVHKQFKWS WYHVPTFAPY KVEGVFYPLI LASGGHAQTT KTALVVLQSL TPNAQSVFRV
301: LAEYQLANEK EEGMPVSSLY TKCRERFLVS SQVTLNSHLT EFKDHDLIKI RKHSDGQDCL RIPLVSDALE KLLQELA

Best Arabidopsis Sequence Match ( AT2G37560.1 )
(BLAST)

001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ

Arabidopsis Description

ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.