Factsheet for PGSC0003DMT400069464

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008733
PGSC0003DMT400033353
PGSC0003DMT400033355
PGSC0003DMT400039751
PGSC0003DMT400039753
PGSC0003DMT400069464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37560.1	PGSC0003DMT400008733	AT1G26840.1	16179646
AT2G37560.1	PGSC0003DMT400069464	AT2G37560.1	16179646
AT2G37560.1	PGSC0003DMT400033353	AT4G12620.1	16179646
AT2G37560.1	PGSC0003DMT400033355	AT4G12620.1	16179646
AT2G37560.1	PGSC0003DMT400039751	AT5G16690.1	16179646
AT2G37560.1	PGSC0003DMT400039753	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073510.2.1	Tomato	nucleus	98.35	98.35
KRH05698	Soybean	endoplasmic reticulum, extracellular	57.85	71.92
VIT_18s0001g10740.t01	Wine grape	nucleus	60.33	69.52
KRH15345	Soybean	nucleus	68.87	68.31
Bra005184.1-P	Field mustard	nucleus	67.77	67.77
CDX74950	Canola	nucleus	67.77	67.77
CDY70246	Canola	nucleus	66.67	66.67
AT2G37560.1	Thale cress	nucleus	66.39	66.39
GSMUA_Achr10P...	Banana	nucleus	53.44	63.19
TraesCS4B01G301600.1	Wheat	nucleus	63.36	60.53
TraesCS4A01G003800.1	Wheat	nucleus	63.36	60.37
TraesCS4D01G299900.1	Wheat	nucleus	63.36	60.37
EER93232	Sorghum	nucleus	61.98	59.68
EER92739	Sorghum	nucleus	61.43	59.31
Zm00001d017423_P001	Maize	nucleus	60.88	58.62
Os03t0184700-01	Rice	nucleus	61.16	58.58

Protein Annotations

EntrezGene:102591115	MapMan:13.2.1.1.2	GO:GO:0000808	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:M1CKH1	InterPro:ORC2	PFAM:PF04084	EnsemblPlantsGene:PGSC0003DMG400027003
PGSC:PGSC0003DMG400027003	EnsemblPlants:PGSC0003DMT400069464	PANTHER:PTHR14052	UniParc:UPI000295F139	RefSeq:XP_006347272.1	SEG:seg

Description

Plant origin recognition complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400027003]

Coordinates

chr6:+:54018934..54024602

Molecular Weight (calculated)

41033.1 Da

IEP (calculated)

5.278

GRAVY (calculated)

-0.150

Length

363 amino acids

Sequence
(BLAST)

001: MDVDEIEEEE FGFSRNYFLA KELGSSSRKK SARKLSEIDL VDEEELREVA ASIEPKHEKE VNELISSYKS LYSKWLFVLR SGFALLMYGF GSKKALIEDF
101: ASKSLTEYSV VVVNGYLQSI NLKQVVITLA ELLWDQVKLR QKTTSGSLCK SQQPFNTKSM SDLLTFLDSP DLEVEECFVC ILVHNIDGPG LRDSDSQQCL
201: ASIAACSHVR MVASIDHVNA PLLWDKKMVH TQFDWYWCHV PTFAPYKVES MFFPFILAHG GSAQSVKTAS IVLQSLTPNA QNVFKVLAEH QMAHPDEEGM
301: PINNLYSTCR ERFLVSSQVT LNSHLTEFKD HELIKTKRNS DGQDCLCIPL TNEALQKLIA DIV

Best Arabidopsis Sequence Match ( AT2G37560.1 )
(BLAST)

001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ

Arabidopsis Description

ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.