Factsheet for PGSC0003DMT400039751

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008733
PGSC0003DMT400069464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16690.1	PGSC0003DMT400008733	AT1G26840.1	16179646
AT5G16690.1	PGSC0003DMT400069464	AT2G37560.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01430.t01	Wine grape	nucleus	56.84	50.4
Solyc12g013880.1.1	Tomato	nucleus	94.83	47.13
GSMUA_Achr2P17940_001	Banana	nucleus	42.25	21.89
KRH23980	Soybean	plastid	48.33	21.6
Bra008604.1-P	Field mustard	nucleus	43.47	21.19
AT5G16690.1	Thale cress	nucleus	46.2	20.71
CDX69432	Canola	nucleus	45.29	20.41
TraesCS7A01G213600.1	Wheat	plastid	43.77	20.03
TraesCS7B01G120800.1	Wheat	plastid	43.77	20.0
HORVU2Hr1G029330.11	Barley	plastid	43.16	19.72
TraesCS7D01G215600.1	Wheat	plastid	42.86	19.58
EES17403	Sorghum	plastid	42.55	19.55
Os10t0402200-01	Rice	nucleus, plastid	41.95	19.22
CDY49642	Canola	nucleus	44.68	18.77
Zm00001d031073_P001	Maize	plastid	0.61	0.66
PGSC0003DMT400039753	Potato	cytosol	0.61	0.55
VIT_16s0039g01440.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

MapMan:13.2.1.1.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:M1B8P6
InterPro:ORC3	EnsemblPlantsGene:PGSC0003DMG401015362	PGSC:PGSC0003DMG401015362	EnsemblPlants:PGSC0003DMT400039751	PANTHER:PTHR12748	UniParc:UPI000295EEDE
SEG:seg	:	:	:	:	:

Description

ATORC3/ORC3 [Source:PGSC_GENE;Acc:PGSC0003DMG401015362]

Coordinates

chr12:+:572438..579578

Molecular Weight (calculated)

37372.3 Da

IEP (calculated)

9.303

GRAVY (calculated)

-0.453

Length

329 amino acids

Sequence
(BLAST)

001: MSLGHGLSEM QRLQELWRSR LMCLYEAGRY HKVALLDLYL EALDPELYNS RLSNQGCDSA KDRSLLSNND KLFKLQKAEV TNQVIRKIRD LPAAKLSQLL
101: KSWERLTKGT MEVHEKIMEL QSQMVSEDVK SHKAELTDIS KRHINRRCLN VEKDACTSND KAVTLAGQMI RDTMQPIECI PFHELICFKD VDNLQSALAG
201: DPRRRIQIDL LNFYKILKCG CCSNSGGTLS PSVHDTSIMY TLAQEHGDLI NLHDWFQSFK ASISSSGKKG LKKLASPKKR KENTSSQNNS DALLQARFCR
301: AVMELQITGL LRMPSKRRPD CVQRVAFGV

Best Arabidopsis Sequence Match ( AT5G16690.1 )
(BLAST)

001: MAPSGTVADP PQCSTTDSFN SSDTAENDIR PFFVLHKASS GNHNGKLTGI VKSKRRIESP SPKIAKRSEV ESVEEEDGQF FSTLRFKVFE TVWSKIEKTI
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS

Arabidopsis Description

ORC3ORC3 [Source:UniProtKB/TrEMBL;Acc:A0A178UNG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.