Factsheet for VIT_16s0039g01430.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02290.t01
VIT_18s0001g10740.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16690.1	VIT_01s0026g02290.t01	AT1G26840.1	16179646
AT5G16690.1	VIT_18s0001g10740.t01	AT2G37560.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039751	Potato	nucleus	50.4	56.84
Solyc12g013880.1.1	Tomato	nucleus	55.26	30.97
GSMUA_Achr2P17940_001	Banana	nucleus	47.44	27.72
KRH23980	Soybean	plastid	54.45	27.45
AT5G16690.1	Thale cress	nucleus	51.48	26.02
CDX69432	Canola	nucleus	49.33	25.07
TraesCS7B01G120800.1	Wheat	plastid	47.17	24.31
TraesCS7A01G213600.1	Wheat	plastid	46.9	24.2
Bra008604.1-P	Field mustard	nucleus	43.94	24.15
TraesCS7D01G215600.1	Wheat	plastid	46.63	24.03
Os10t0402200-01	Rice	nucleus, plastid	46.36	23.96
HORVU2Hr1G029330.11	Barley	plastid	46.36	23.89
CDY49642	Canola	nucleus	49.06	23.24
EES17403	Sorghum	plastid	44.47	23.04
Zm00001d031073_P001	Maize	plastid	1.08	1.31
PGSC0003DMT400039753	Potato	cytosol	1.08	1.11
VIT_16s0039g01440.t01	Wine grape	cytosol	0.54	0.82

Protein Annotations

MapMan:13.2.1.1.3	ProteinID:CCB50573	ProteinID:CCB50573.1	UniProt:F6HEC7	EMBL:FN595750	GO:GO:0000784
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003688	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005656	GO:GO:0005664
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006267	GO:GO:0006270	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031261
InterPro:ORC3	PANTHER:PTHR12748	UniParc:UPI0002108D77	ArrayExpress:VIT_16s0039g01430	EnsemblPlantsGene:VIT_16s0039g01430	EnsemblPlants:VIT_16s0039g01430.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:898721..928804

Molecular Weight (calculated)

42657.5 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.446

Length

371 amino acids

Sequence
(BLAST)

001: MAANLGFWSE EHALFPEEML KYAFDLPSCR RNNTEERTGE NLAHDLSELK RLQKCWSTTV LCLYEAGKYN KIQLLDLFCE AVVPCLGNST ASNHHLGSGI
101: SSSSDHSIHH QYLISEKCSF ICQAIRKVRD LPVVLLYQLL KSWEKLTEDV IEIHDKVKEL QSLLKFENGK SLKQDLTNIP KRHTSRSHLN MDKDSKVLNE
201: KAARLMETMV RDYMQPVECI PFHEIVCFKN VDKLQSALMG DPRRRIQLDL LEFQKILLCS CCSNSSKAIL PSMHDTSILY TLAQEHGDLI NLHDWYQSFK
301: STVFQPSTKG KHKLKQSPAK KRKDTNESQN QSEASIQVRF CRAVTELQIT GLLRMPSKRR PDYVQRVAFG L

Best Arabidopsis Sequence Match ( AT5G16690.1 )
(BLAST)

001: MAPSGTVADP PQCSTTDSFN SSDTAENDIR PFFVLHKASS GNHNGKLTGI VKSKRRIESP SPKIAKRSEV ESVEEEDGQF FSTLRFKVFE TVWSKIEKTI
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS

Arabidopsis Description

ORC3ORC3 [Source:UniProtKB/TrEMBL;Acc:A0A178UNG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.