Factsheet for PGSC0003DMT400039753

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008733
PGSC0003DMT400069464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16690.1	PGSC0003DMT400008733	AT1G26840.1	16179646
AT5G16690.1	PGSC0003DMT400069464	AT2G37560.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01440.t01	Wine grape	cytosol	37.12	54.92
Solyc12g013880.1.1	Tomato	nucleus	76.73	41.84
Zm00001d031073_P001	Maize	plastid	28.53	33.77
Bra008604.1-P	Field mustard	nucleus	45.71	24.44
KRH23980	Soybean	plastid	48.48	23.78
CDX69432	Canola	nucleus	45.71	22.6
AT5G16690.1	Thale cress	nucleus	45.71	22.48
GSMUA_Achr2P17940_001	Banana	nucleus	39.34	22.36
TraesCS7B01G120800.1	Wheat	plastid	43.49	21.81
CDY49642	Canola	nucleus	47.09	21.71
TraesCS7A01G213600.1	Wheat	plastid	43.21	21.7
HORVU2Hr1G029330.11	Barley	plastid	43.21	21.67
TraesCS7D01G215600.1	Wheat	plastid	42.94	21.53
Os10t0402200-01	Rice	nucleus, plastid	42.11	21.17
EES17403	Sorghum	plastid	41.27	20.81
VIT_16s0039g01430.t01	Wine grape	nucleus	1.11	1.08
PGSC0003DMT400039751	Potato	nucleus	0.55	0.61

Protein Annotations

MapMan:13.2.1.1.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:M1B8P8
InterPro:ORC3	PFAM:PF07034	EnsemblPlantsGene:PGSC0003DMG402015362	PGSC:PGSC0003DMG402015362	EnsemblPlants:PGSC0003DMT400039753	PANTHER:PTHR12748
UniParc:UPI00029586B4	:	:	:	:	:

Description

Origin recognition complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402015362]

Coordinates

chr12:+:567095..571903

Molecular Weight (calculated)

39877.1 Da

IEP (calculated)

7.433

GRAVY (calculated)

0.022

Length

361 amino acids

Sequence
(BLAST)

001: MYSPNEHTHT DPLAENNLQP FFVLHKASKS SESTAISPGR PTKRRLDSSP KVSLNNENVK MEAFQCVWSK IESKIKDVLR SINADVFDEI GQWVRESFNE
101: ICSCRGPVDP SKSSLPYPFV HNGGLVKKLF TGLVFTKNIE TVDDILTFAE LGLNLKSRGC YVANISSLDF STKNGIGGSL RAFLRQLLMV DIEAADISLL
201: ASWYSDHGKY EKPVVVIIED MERCSGALLS DFINMLSEWS VKIPIILIAG VATSADAPRN VLTARALQYL STSIFSLKCP AEKLDTIIEA VLVKNCAGFS
301: VGHKVATFLR NYFLRQDGTV TSFVRALKMA IIQQLSIEPL SFVLKLLVDE GDSKVNATSQ T

Best Arabidopsis Sequence Match ( AT5G16690.1 )
(BLAST)

001: MAPSGTVADP PQCSTTDSFN SSDTAENDIR PFFVLHKASS GNHNGKLTGI VKSKRRIESP SPKIAKRSEV ESVEEEDGQF FSTLRFKVFE TVWSKIEKTI
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS

Arabidopsis Description

ORC3ORC3 [Source:UniProtKB/TrEMBL;Acc:A0A178UNG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.