Factsheet for PGSC0003DMT400008733

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008733
PGSC0003DMT400033353
PGSC0003DMT400033355
PGSC0003DMT400039751
PGSC0003DMT400039753
PGSC0003DMT400069464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	PGSC0003DMT400008733	AT1G26840.1	16179646
AT1G26840.1	PGSC0003DMT400069464	AT2G37560.1	16179646
AT1G26840.1	PGSC0003DMT400033353	AT4G12620.1	16179646
AT1G26840.1	PGSC0003DMT400033355	AT4G12620.1	16179646
AT1G26840.1	PGSC0003DMT400039751	AT5G16690.1	16179646
AT1G26840.1	PGSC0003DMT400039753	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007450.2.1	Tomato	nucleus	97.89	97.89
VIT_01s0026g02290.t01	Wine grape	nucleus	74.3	73.26
Bra024679.1-P	Field mustard	nucleus	67.25	68.95
CDY50731	Canola	nucleus	68.66	68.66
CDY16197	Canola	nucleus	67.96	67.96
CDY45005	Canola	nucleus	67.61	67.61
Bra016292.1-P	Field mustard	cytosol, nucleus, plastid	66.9	66.9
CDY46436	Canola	cytosol, nucleus, plastid	66.9	66.9
AT1G26840.1	Thale cress	nucleus	66.9	66.9
GSMUA_Achr11P...	Banana	nucleus	66.9	65.97
KRH70714	Soybean	nucleus	65.85	65.38
KRH74848	Soybean	nucleus	64.08	63.64
Zm00001d022226_P002	Maize	nucleus, plastid	64.44	62.46
Os07t0628600-00	Rice	nucleus, plastid	64.08	61.69
EER99752	Sorghum	nucleus, plastid	63.38	61.43
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	55.63	60.77
TraesCS2B01G183200.1	Wheat	nucleus, plastid	62.68	60.54
TraesCS2D01G163800.1	Wheat	nucleus, plastid	62.68	60.54
TraesCS2A01G157700.1	Wheat	nucleus, plastid	62.68	59.93
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	60.21	58.97
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	51.76	58.8
CDY31509	Canola	extracellular	23.59	51.15
TraesCS5B01G221800.3	Wheat	nucleus	57.75	48.96

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102584483	MapMan:13.2.1.1.6	ProteinID:ABO92997	ProteinID:ABO92997.1	ProteinID:ABO93015
ProteinID:ABO93015.1	EMBL:EF514212	EMBL:EF514213	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009555	GO:GO:0009987	UniProt:M0ZV01	InterPro:ORC6	InterPro:ORC6_met/pln
PFAM:PD315657	PFAM:PF05460	EnsemblPlantsGene:PGSC0003DMG400003384	PGSC:PGSC0003DMG400003384	EnsemblPlants:PGSC0003DMT400008733	PANTHER:PTHR13394
UniParc:UPI000294A467	RefSeq:XP_006363217.1	:	:	:	:

Description

Origin-recognition complex subunit 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400003384]

Coordinates

chr5:-:5359366..5362349

Molecular Weight (calculated)

31996.7 Da

IEP (calculated)

10.086

GRAVY (calculated)

-0.483

Length

284 amino acids

Sequence
(BLAST)

001: MDLSDIARKL GLTETKHLVR KAAELRRLAD VQFDSSVIGV GEICKAIICL EIAACRMDVV FDRQAAIKLS GMSEKAYNRS FTSMQNGIGV KNKLDIRELA
101: IQFGCIRLIP FVQKGLSLYK DRFRTSLPPS RRASADFSRP VFTAAAFYLC AKRHKLKVDK MKLIELCGTS EPEFASVSTS MTDLCFDVFG TSKEKKDPKT
201: VKGNRELLDA LPEKRRVEDG GYSSEDDNSS AYKKRKRMDE HAYEEWKSTV LASKNQSSQK APKQTKQARL DFMKKVPETK VQAT

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.