Factsheet for GSMUA_Achr11P13040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P17940_001
GSMUA_Achr8P31340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	GSMUA_Achr11P...	AT1G26840.1	16179646
AT1G26840.1	GSMUA_Achr10P...	AT2G37560.1	16179646
AT1G26840.1	GSMUA_Achr8P31340_001	AT4G12620.1	16179646
AT1G26840.1	GSMUA_Achr2P17940_001	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g02290.t01	Wine grape	nucleus	68.75	68.75
EER99752	Sorghum	nucleus, plastid	68.75	67.58
Os07t0628600-00	Rice	nucleus, plastid	69.1	67.46
TraesCS2D01G163800.1	Wheat	nucleus, plastid	68.75	67.35
TraesCS2B01G183200.1	Wheat	nucleus, plastid	68.75	67.35
Solyc05g007450.2.1	Tomato	nucleus	66.32	67.25
PGSC0003DMT400008733	Potato	nucleus	65.97	66.9
TraesCS2A01G157700.1	Wheat	nucleus, plastid	68.75	66.67
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	65.97	65.52
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	56.6	65.2
Zm00001d022226_P002	Maize	nucleus, plastid	66.32	65.19
KRH70714	Soybean	nucleus	64.24	64.69
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	57.29	63.46
KRH74848	Soybean	nucleus	62.15	62.59
AT1G26840.1	Thale cress	nucleus	60.07	60.92
Bra024679.1-P	Field mustard	nucleus	58.33	60.65
CDY50731	Canola	nucleus	59.72	60.56
CDY16197	Canola	nucleus	59.38	60.21
CDY45005	Canola	nucleus	58.33	59.15
Bra016292.1-P	Field mustard	cytosol, nucleus, plastid	58.33	59.15
CDY46436	Canola	cytosol, nucleus, plastid	57.99	58.8
TraesCS5B01G221800.3	Wheat	nucleus	63.89	54.93
CDY31509	Canola	extracellular	23.96	52.67

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.2.1.1.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009555	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr11G13040_001	EnsemblPlants:GSMUA_Achr11P13040_001	EnsemblPlants:GSMUA_Achr11T13040_001	UniProt:M0RRT4
InterPro:ORC6	InterPro:ORC6_met/pln	PFAM:PD315657	PFAM:PF05460	PANTHER:PTHR13394	UniParc:UPI000296D31D
SEG:seg	:	:	:	:	:

Description

Origin recognition complex subunit 6 [Source:GMGC_GENE;Acc:GSMUA_Achr11G13040_001]

Coordinates

chr11:-:12844322..12848064

Molecular Weight (calculated)

32101.0 Da

IEP (calculated)

10.496

GRAVY (calculated)

-0.320

Length

288 amino acids

Sequence
(BLAST)

001: MDFSTIASRL GLAGSKPLIR KAEELRRFSD VQFNSSIIGV GEIAKAIICL ELAASRFDVV FDRQSAIKMS GMSEKAYMRS LNAMKNGIGV KPSLDVRQLG
101: IQFGCVRLIP FVKKGLTLYK DRFLAALPPS RRTSTDFNRP VFTAVAFYLC AKRHKLKVDK LRLIELCGTS ESEFATVSTS MGDLCFDVFG IFKEKKNPKA
201: VKGHRELLDA LPSKRRRADD GDASDDSSGD ELSSYKRHKK MEKQAYENWK ISVISSNKQE KTAPLKAKKQ ATLNFTRKSP SSIALEAL

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.