Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033355 | Potato | cytosol | 8.0 | 70.33 |
| VIT_06s0004g00530.t01 | Wine grape | cytosol | 54.5 | 67.49 |
| OQU75979 | Sorghum | plastid | 64.25 | 63.46 |
| KRH23133 | Soybean | nucleus | 66.88 | 62.87 |
| KRH10202 | Soybean | nucleus | 66.25 | 62.06 |
| TraesCS7A01G151700.1 | Wheat | plastid | 60.0 | 61.3 |
| Solyc03g006420.2.1 | Tomato | nucleus | 63.62 | 61.25 |
| Zm00001d045080_P001 | Maize | plastid | 62.5 | 61.12 |
| TraesCS7D01G153500.1 | Wheat | plastid | 62.75 | 60.55 |
| CDY16697 | Canola | plastid | 60.5 | 59.83 |
| Bra029471.1-P | Field mustard | plastid | 60.5 | 59.53 |
| CDY62377 | Canola | plastid | 60.5 | 59.31 |
| AT4G14700.1 | Thale cress | plastid | 59.0 | 58.34 |
| PGSC0003DMT400033353 | Potato | nucleus, plastid | 54.25 | 58.02 |
| VIT_06s0004g02050.t01 | Wine grape | nucleus | 65.5 | 57.71 |
| Zm00001d037086_P006 | Maize | nucleus, plastid | 63.62 | 57.51 |
| AT4G12620.1 | Thale cress | plastid | 58.25 | 57.32 |
| TraesCS7B01G055600.1 | Wheat | nucleus | 63.12 | 57.0 |
| HORVU7Hr1G031190.2 | Barley | nucleus | 62.5 | 52.85 |
| VIT_13s0175g00030.t01 | Wine grape | extracellular | 10.0 | 50.96 |
| HORVU3Hr1G033880.2 | Barley | plastid | 11.62 | 35.77 |
| GSMUA_Achr6P33780_001 | Banana | nucleus | 13.88 | 22.52 |
Protein Annotations
| Gene3D:1.10.8.1280 | MapMan:13.2.1.1.1 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_core |
| InterPro:BAH_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr8G31340_001 | EnsemblPlants:GSMUA_Achr8P31340_001 | EnsemblPlants:GSMUA_Achr8T31340_001 | InterPro:IPR001025 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0TV86 | InterPro:ORC1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF00628 |
| PFAM:PF01426 | ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS51038 | PANTHER:PTHR10763 | PANTHER:PTHR10763:SF23 |
| SMART:SM00249 | SMART:SM00382 | SMART:SM00439 | SUPFAM:SSF52540 | SUPFAM:SSF57903 | UniParc:UPI0002968D78 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
ORC1 - Putative origin recognition complex subunit 1, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G31340_001]
Coordinates
chr8:-:33034692..33043680
Molecular Weight (calculated)
90407.4 Da
IEP (calculated)
8.119
GRAVY (calculated)
-0.517
Length
800 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATPRKPKP RSTPLRPKPS PLVPPTPESA TPRRSLRLHR SASGLASPLT PGPAAGRLDI PRSARKAKRS LQIDEAPLTE PPSAFSPVTP ESKRRRRSQP
101: SRASNGRVYY KKVVYDGGEF EVGDDVYVKR KEAPESADDD PEVEECRICF RTGRRVMIEC DDCLGGFHLV CLEPPLRKIP EGDWICGFCQ ARKMGIDVEL
201: PKPPEGRKMR RTAKEKLLSS DLWAARIESL WREPDGTYWL KCRWYIIPEE TAVGRQPHNL RRELYRTNDL GDIEIESVLR HCYVMSPNNY KEASNEGDDV
301: FYCEYEYDIH WHNFKRLTDI DDAIENDKGV ESDEDWKISK DPDTDEDSEC EELARVNHSA QRRHESAANI RKGRTFGLQK IGIKRIPEHA RCSKQTDLEK
401: AKAMLLLATL PKSLPCRTKE MEEITAFIRG AISDDHCSGR CLYIHGVPGT GKTMSVLAAM RNLRSEVDAR TVRPYTFVDI NGLKLASPEN IYKVIYEALS
501: GYRVGWKTAL HLLNERFSKG GGVSNNELRP CVLLIDELDL LLTRNQSVLY NILDWPTKPQ SKLVVIGIAN TMDLPEKLLP RISSRMGIQR LCFGPYSYQQ
601: LQEIISSRLK GLDAFEEQAV EFASRKVAAM SGDARRALEI CRRAAEIADY QFKQSPLCKQ PSESVDGSFE GKRLVGMADI EAAIHELFQA PHIQIMKTAS
701: RLGKIFLVAM VYELYRSGLG ETNFEKLATT VASLCTSNKE ASPGWDTLLK VGCKLGESRI ILCEEGTKHR LQKLQLNFPS DDVAFALKDC SELPWLSKYL
101: SRASNGRVYY KKVVYDGGEF EVGDDVYVKR KEAPESADDD PEVEECRICF RTGRRVMIEC DDCLGGFHLV CLEPPLRKIP EGDWICGFCQ ARKMGIDVEL
201: PKPPEGRKMR RTAKEKLLSS DLWAARIESL WREPDGTYWL KCRWYIIPEE TAVGRQPHNL RRELYRTNDL GDIEIESVLR HCYVMSPNNY KEASNEGDDV
301: FYCEYEYDIH WHNFKRLTDI DDAIENDKGV ESDEDWKISK DPDTDEDSEC EELARVNHSA QRRHESAANI RKGRTFGLQK IGIKRIPEHA RCSKQTDLEK
401: AKAMLLLATL PKSLPCRTKE MEEITAFIRG AISDDHCSGR CLYIHGVPGT GKTMSVLAAM RNLRSEVDAR TVRPYTFVDI NGLKLASPEN IYKVIYEALS
501: GYRVGWKTAL HLLNERFSKG GGVSNNELRP CVLLIDELDL LLTRNQSVLY NILDWPTKPQ SKLVVIGIAN TMDLPEKLLP RISSRMGIQR LCFGPYSYQQ
601: LQEIISSRLK GLDAFEEQAV EFASRKVAAM SGDARRALEI CRRAAEIADY QFKQSPLCKQ PSESVDGSFE GKRLVGMADI EAAIHELFQA PHIQIMKTAS
701: RLGKIFLVAM VYELYRSGLG ETNFEKLATT VASLCTSNKE ASPGWDTLLK VGCKLGESRI ILCEEGTKHR LQKLQLNFPS DDVAFALKDC SELPWLSKYL
001: MASSLSSKAK TFKSPTKTPT KMYRKSYLSP SSTSLTPPQT PETLTPLRRS SRHVSRKINL GNDPIDLPGK ESVEEINLIR KPRKRTNDIV VAEKSKKKKI
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL
Arabidopsis Description
ORC1AOrigin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.