Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH37947 | Soybean | plastid | 55.74 | 72.5 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 71.02 | 70.65 |
| VIT_18s0001g14540.t01 | Wine grape | nucleus | 67.23 | 70.36 |
| KRH37970 | Soybean | cytosol | 29.24 | 70.0 |
| KRH46113 | Soybean | nucleus | 69.06 | 69.88 |
| TraesCS5B01G378100.1 | Wheat | nucleus | 71.02 | 69.83 |
| TraesCS5D01G385400.1 | Wheat | nucleus | 70.89 | 69.79 |
| TraesCS5A01G375900.1 | Wheat | nucleus | 70.63 | 69.54 |
| KRG98832 | Soybean | nucleus | 68.41 | 69.04 |
| KXG35997 | Sorghum | nucleus | 71.54 | 69.02 |
| Os12t0481100-01 | Rice | nucleus | 71.8 | 68.58 |
| Zm00001d006113_P001 | Maize | nucleus | 70.63 | 68.57 |
| PGSC0003DMT400025551 | Potato | nucleus | 65.27 | 67.11 |
| Solyc04g081580.2.1 | Tomato | nucleus | 65.14 | 67.07 |
| HORVU5Hr1G093160.3 | Barley | nucleus | 71.02 | 65.46 |
| CDY40519 | Canola | nucleus | 59.4 | 60.03 |
| AT4G16630.1 | Thale cress | nucleus | 61.62 | 59.82 |
| CDY50846 | Canola | nucleus | 62.92 | 57.45 |
| CDY53643 | Canola | nucleus | 63.05 | 57.23 |
| Bra040743.1-P | Field mustard | nucleus | 63.19 | 55.38 |
| Bra038492.1-P | Field mustard | nucleus | 56.92 | 48.02 |
| CDY32273 | Canola | nucleus | 56.66 | 47.54 |
| GSMUA_Achr3P14380_001 | Banana | cytosol | 16.06 | 27.52 |
| GSMUA_Achr5P09910_001 | Banana | nucleus | 16.58 | 26.79 |
| GSMUA_Achr10P... | Banana | cytosol | 17.1 | 25.34 |
| GSMUA_Achr7P18160_001 | Banana | nucleus | 18.67 | 24.49 |
| GSMUA_Achr8P01870_001 | Banana | cytosol | 20.1 | 23.66 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 16.84 | 23.12 |
| GSMUA_Achr5P10150_001 | Banana | nucleus | 20.89 | 20.78 |
| GSMUA_Achr8P34380_001 | Banana | cytosol | 19.71 | 20.77 |
| GSMUA_Achr9P14580_001 | Banana | nucleus | 21.67 | 20.22 |
| GSMUA_Achr8P04210_001 | Banana | cytosol | 18.93 | 19.59 |
| GSMUA_Achr10P... | Banana | mitochondrion | 19.19 | 19.42 |
| GSMUA_Achr6P00390_001 | Banana | cytosol, mitochondrion | 18.28 | 19.07 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSMUA_Achr8G12970_001 | EnsemblPlants:GSMUA_Achr8P12970_001 | EnsemblPlants:GSMUA_Achr8T12970_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | UniProt:M0TQ00 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF541 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0002955A60 |
| SEG:seg | : | : | : | : | : |
Description
DEAD-box ATP-dependent RNA helicase 28 [Source:GMGC_GENE;Acc:GSMUA_Achr8G12970_001]
Coordinates
chr8:+:9737718..9758660
Molecular Weight (calculated)
86063.6 Da
IEP (calculated)
9.873
GRAVY (calculated)
-0.531
Length
766 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPEFLFDGA SSDEEAGVEE RAAQSPWEFA SYSESVAEEH ARRNTTSIDA KITKALQERA VSLPEDGDGE EAEEEPELSD EILFGDELGK QRLISFEGKI
101: VRHINHQNAG FIVLRNCNIS MEIAAVAQNS VADGGNSGAR AHSFFASHEG ASFHANSFLE LNLSRPLVRA CEALGYQKPT PIQAACIPLA LTGRDICGSA
201: MTGSGKTAAF TLPVLERLLF RPKRILAIRV LILTPTRELA AQVHSMIEKL AQFTDIRCCL VVGGLSTKVQ EAALRSMPDI VVATPGRIID HLRNSLSVGL
301: EDLAVVILDE ADRLLELGFS AEIQELIRMC PKRRQTMLFS ATMTEEVDKL VKLSLNKPVR LEADPSSKRP ATLTEEFVRI RRAREINQEA VLLSLCSKTF
401: TQKVIIFSGT KQAAHRLKII FGLSGMKAAE LHGNLTQAQR LDALEQFRKQ EVDFLIATDV AARGLDIVGV QTVINFACPR DYKSYLHRVG RTARAGREGY
501: AVTFVTDDDR SLLKAIAKKA GSQLKNRIVA ERPVAEWSKL VEQMEDQISI VLQEEREERA LRKAEMEATK AENMIMHKEE IFSRPKRTWF ATEKEKKALA
601: KAAKASLGKD QNGLNEVMSL QEAEDLKLKE KRRREREKNL PRKKRRKLEA AREMLENEDN DEDQETEGGN KKKTRQSLVD LAYKRAKSVK AMKKMHEAGR
701: NLKKTIKYKN KPVQKDQTRK EEMLELFQND MSDKKQARIG KKSSNVSGQR KSKSSFKSKS RYKRKK
101: VRHINHQNAG FIVLRNCNIS MEIAAVAQNS VADGGNSGAR AHSFFASHEG ASFHANSFLE LNLSRPLVRA CEALGYQKPT PIQAACIPLA LTGRDICGSA
201: MTGSGKTAAF TLPVLERLLF RPKRILAIRV LILTPTRELA AQVHSMIEKL AQFTDIRCCL VVGGLSTKVQ EAALRSMPDI VVATPGRIID HLRNSLSVGL
301: EDLAVVILDE ADRLLELGFS AEIQELIRMC PKRRQTMLFS ATMTEEVDKL VKLSLNKPVR LEADPSSKRP ATLTEEFVRI RRAREINQEA VLLSLCSKTF
401: TQKVIIFSGT KQAAHRLKII FGLSGMKAAE LHGNLTQAQR LDALEQFRKQ EVDFLIATDV AARGLDIVGV QTVINFACPR DYKSYLHRVG RTARAGREGY
501: AVTFVTDDDR SLLKAIAKKA GSQLKNRIVA ERPVAEWSKL VEQMEDQISI VLQEEREERA LRKAEMEATK AENMIMHKEE IFSRPKRTWF ATEKEKKALA
601: KAAKASLGKD QNGLNEVMSL QEAEDLKLKE KRRREREKNL PRKKRRKLEA AREMLENEDN DEDQETEGGN KKKTRQSLVD LAYKRAKSVK AMKKMHEAGR
701: NLKKTIKYKN KPVQKDQTRK EEMLELFQND MSDKKQARIG KKSSNVSGQR KSKSSFKSKS RYKRKK
001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
Arabidopsis Description
RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.