Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G375900.1 | Wheat | nucleus | 90.25 | 96.4 |
| TraesCS5D01G385400.1 | Wheat | nucleus | 89.77 | 95.89 |
| TraesCS5B01G378100.1 | Wheat | nucleus | 89.65 | 95.64 |
| Os12t0481100-01 | Rice | nucleus | 76.78 | 79.55 |
| KXG35997 | Sorghum | nucleus | 75.33 | 78.84 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 72.44 | 78.18 |
| Zm00001d006113_P001 | Maize | nucleus | 73.16 | 77.06 |
| GSMUA_Achr8P12970_001 | Banana | nucleus | 65.46 | 71.02 |
| KRH37970 | Soybean | cytosol | 26.23 | 68.12 |
| VIT_18s0001g14540.t01 | Wine grape | nucleus | 59.93 | 68.03 |
| KRH37947 | Soybean | plastid | 48.01 | 67.74 |
| Solyc04g081580.2.1 | Tomato | nucleus | 59.57 | 66.53 |
| KRH46113 | Soybean | nucleus | 60.41 | 66.31 |
| PGSC0003DMT400025551 | Potato | nucleus | 59.45 | 66.31 |
| KRG98832 | Soybean | nucleus | 59.93 | 65.61 |
| AT4G16630.1 | Thale cress | nucleus | 56.68 | 59.7 |
| CDY40519 | Canola | nucleus | 53.67 | 58.84 |
| CDY50846 | Canola | nucleus | 56.08 | 55.54 |
| CDY53643 | Canola | nucleus | 56.2 | 55.33 |
| Bra040743.1-P | Field mustard | nucleus | 56.2 | 53.43 |
| Bra038492.1-P | Field mustard | nucleus | 51.74 | 47.36 |
| CDY32273 | Canola | nucleus | 51.74 | 47.1 |
| HORVU2Hr1G022490.2 | Barley | nucleus | 16.0 | 26.98 |
| HORVU6Hr1G020570.1 | Barley | plastid | 18.17 | 26.68 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 15.52 | 25.96 |
| HORVU3Hr1G054730.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 16.73 | 25.84 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 17.45 | 24.09 |
| HORVU3Hr1G018130.7 | Barley | plastid | 18.05 | 22.16 |
| HORVU1Hr1G004510.5 | Barley | plastid | 17.21 | 21.67 |
| HORVU2Hr1G028120.2 | Barley | plastid | 12.39 | 20.72 |
| HORVU2Hr1G088480.2 | Barley | nucleus, plastid | 20.1 | 19.24 |
| HORVU6Hr1G093300.7 | Barley | cytosol, nucleus | 16.37 | 17.89 |
| HORVU4Hr1G083970.6 | Barley | nucleus | 13.96 | 13.29 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A287SA03 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:HORVU5Hr1G093160 | EnsemblPlants:HORVU5Hr1G093160.3 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF541 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI000B48687F | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:590652330..590654989
Molecular Weight (calculated)
92399.3 Da
IEP (calculated)
5.574
GRAVY (calculated)
-0.697
Length
831 amino acids
Sequence
(BLAST)
(BLAST)
001: LQLGRPNSDV LGPFVRLRER SCWIKPSPPP PNPNTPPPEN LTQPPTSAFP VLPNMDPDFR FDPDGSDDEA AGGATARRKP AQSPWEFSTY AESVAAEHAA
101: RRTTSIDEKI SQALRGRRNP SMPDGSDDDE EEEDADDDSD EEAAVKGESG DDEDEIEESD DDDEEIESSG GEEDGEAEGG EQGEEEVGED EDEDAVQEED
201: DAPEQPDPAQ FFASSEGASF SARSFLELNL SRPLIRACEA LGYQKPTPIQ AACIPLALTG RDICGSAITG SGKTAAFSLP VLERLLFRPK RVPAIRVLIL
301: TPTRELAAQV HSMIEKLAQF TDIRCCLIVG GLPTKAQEVA LRSNPDIVVA TPGRIVDHLR NSLSVGLEDL AVLILDEADR LLELGFSVEI GELIRMCPKR
401: RQTMLFSATM TEQIDELVKL SLNKPVRLEA DPSLKRPATL TEEVVRIRRS REATQEAVLL ALCLKTFKER VIIFSGTKHS AHRLKILFGL SGIKAAELHG
501: NLTQAQRLEA LEQFKKQEAD ILIATDIAAR GIDIVGVRTV INFACPRDVK TYLHRVGRTA RAGREGYAVT FVTDDDRSLL KAIAKKAGSQ LKSRIVAEKP
601: VSDCAKLIEQ LEHQISNIIL EEREEMALRK AEMEATKAEN MIAHRDEIYS RPKRTWFATE KEKKLLAKAA KESLDQVKGG SAVVSAQQAE DLHLKEKRRR
701: EREKNLPRKK RRKLEAQREM LEEEKEEEAA QERNGGKKAK SSQSVVDVAY RRAKSMKATG KIGVGAGKGK NEKKSKQPAE KGQTRQEEMH ELFQNDMSEW
801: KQGRSLKKKD SSFEKKSKNS FKSKSRYKRR K
101: RRTTSIDEKI SQALRGRRNP SMPDGSDDDE EEEDADDDSD EEAAVKGESG DDEDEIEESD DDDEEIESSG GEEDGEAEGG EQGEEEVGED EDEDAVQEED
201: DAPEQPDPAQ FFASSEGASF SARSFLELNL SRPLIRACEA LGYQKPTPIQ AACIPLALTG RDICGSAITG SGKTAAFSLP VLERLLFRPK RVPAIRVLIL
301: TPTRELAAQV HSMIEKLAQF TDIRCCLIVG GLPTKAQEVA LRSNPDIVVA TPGRIVDHLR NSLSVGLEDL AVLILDEADR LLELGFSVEI GELIRMCPKR
401: RQTMLFSATM TEQIDELVKL SLNKPVRLEA DPSLKRPATL TEEVVRIRRS REATQEAVLL ALCLKTFKER VIIFSGTKHS AHRLKILFGL SGIKAAELHG
501: NLTQAQRLEA LEQFKKQEAD ILIATDIAAR GIDIVGVRTV INFACPRDVK TYLHRVGRTA RAGREGYAVT FVTDDDRSLL KAIAKKAGSQ LKSRIVAEKP
601: VSDCAKLIEQ LEHQISNIIL EEREEMALRK AEMEATKAEN MIAHRDEIYS RPKRTWFATE KEKKLLAKAA KESLDQVKGG SAVVSAQQAE DLHLKEKRRR
701: EREKNLPRKK RRKLEAQREM LEEEKEEEAA QERNGGKKAK SSQSVVDVAY RRAKSMKATG KIGVGAGKGK NEKKSKQPAE KGQTRQEEMH ELFQNDMSEW
801: KQGRSLKKKD SSFEKKSKNS FKSKSRYKRR K
001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
Arabidopsis Description
RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.