CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G16630.1	Thale cress	nucleus	85.75	82.38
CDY50846	Canola	nucleus	89.97	81.29
CDY53643	Canola	nucleus	90.24	81.04
CDY32273	Canola	nucleus	89.45	74.26
KRH37947	Soybean	plastid	52.77	67.91
VIT_18s0001g14540.t01	Wine grape	nucleus	63.85	66.12
KRH46113	Soybean	nucleus	65.7	65.79
KRH37970	Soybean	cytosol	27.7	65.62
KRG98832	Soybean	nucleus	65.44	65.35
Solyc04g081580.2.1	Tomato	nucleus	63.98	65.19
PGSC0003DMT400025551	Potato	nucleus	63.72	64.83
GSMUA_Achr8P12970_001	Banana	nucleus	60.03	59.4
Zm00001d021127_P001	Maize	nucleus, plasma membrane	58.71	57.79
TraesCS5D01G385400.1	Wheat	nucleus	59.1	57.58
TraesCS5A01G375900.1	Wheat	nucleus	58.84	57.33
TraesCS5B01G378100.1	Wheat	nucleus	58.84	57.25
Os12t0481100-01	Rice	nucleus	60.42	57.11
KXG35997	Sorghum	nucleus	59.63	56.93
Zm00001d006113_P001	Maize	nucleus	59.23	56.91
HORVU5Hr1G093160.3	Barley	nucleus	58.84	53.67
CDY42845	Canola	cytosol	18.47	31.18
CDY47007	Canola	cytosol	18.34	30.96
CDY52844	Canola	cytosol	19.79	30.8
CDX81759	Canola	cytosol	19.66	30.53
CDY40740	Canola	cytosol	17.55	24.58
CDX96202	Canola	cytosol	8.97	24.46
CDY18530	Canola	nucleus	17.94	23.94
CDX95512	Canola	nucleus	17.94	23.86
CDX99342	Canola	nucleus	17.81	23.77
CDX82336	Canola	nucleus	17.94	23.73
CDY36514	Canola	nucleus	18.07	23.5
CDX92251	Canola	nucleus	17.55	23.37
CDX75974	Canola	nucleus	17.94	23.37
CDX70149	Canola	nucleus	18.34	23.24
CDY44780	Canola	mitochondrion	17.68	23.18
CDY14112	Canola	cytosol	18.07	23.06
CDY08740	Canola	nucleus	18.07	23.06
CDY04952	Canola	nucleus	18.07	23.06
CDX79974	Canola	nucleus	19.39	21.37
CDY23886	Canola	plasma membrane	19.39	20.97
CDY41525	Canola	mitochondrion	19.13	20.39
CDY17287	Canola	nucleus	17.41	20.18
CDX84428	Canola	mitochondrion	18.6	19.94
CDY52719	Canola	nucleus, plastid	21.24	19.42
CDX68066	Canola	cytosol	21.64	19.25
CDY34979	Canola	nucleus, plastid	21.11	19.23
CDX79187	Canola	cytosol	21.5	19.22
CDY49890	Canola	mitochondrion	17.41	16.92
CDY45370	Canola	mitochondrion	17.28	16.75
CDX69933	Canola	cytosol	2.9	16.18
CDY21554	Canola	mitochondrion	19.53	10.89
CDX69935	Canola	mitochondrion	19.79	10.88

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078HTC3	UniProt:A0A078HTC3	EnsemblPlants:CDY40519	ProteinID:CDY40519
ProteinID:CDY40519.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00069822001
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EEC8BA	SEG:seg	:	:	:

Description

BnaC01g19930DBnaC01g19930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTC3]

Coordinates

chrLK032473:+:146054..149955

Molecular Weight (calculated)

85412.9 Da

IEP (calculated)

9.356

GRAVY (calculated)

-0.778

Length

758 amino acids

Sequence
(BLAST)

001: MSGAFFYDAD SDEELEFLNH EENSSGEDKA EERKGQAEAE EDEDGEEGEK PRGGKRSTDA ESPWDARRHT TSIDEKISKA MKHRPLPIST EEEEEDVSDA
101: QHGKQEEEDT AELKADDAAT KPFFSTVDGV SFHADSFIKL NLPRPLIQAC KTLGYKKPTP IQAACIPLAM MGRDLCASAI TGSGKTAAFA LPTLERLLHR
201: PKRVFATRVL ILTPTRELAV QIHSMIQKLA QYTDIKCGLI VGGLSVREQE VVLRSMPDIV VATPGRMIDH LRNSMSVDLD HLSVLILDEA DRLLQTGFAT
301: EIQELVRLCP KRRQTMLFSA TMTEEVKELV KLSLNKPLRL SADPSARRPP GLTEEVVRVR RTREANQEAV LLSLCTRTFK SKVIIFSGTK QAAHRLKILF
401: GLTGLKAAEL HGNLTQAQRL DSLELFRKQE VDFLIATDVA ARGLDIIGVQ TVINYACPRE IDSYVHRVGR TARAGREGYA VTFVTDNDRS LLKVIAKKVG
501: SKLKSRIIPE QSVVKWSQII DEMEDQYSTV IREEREERAL RKAELEFAKA ENMIEHRDEI YARPKRTWFM TEKEKKLVAK AEKDSAGNPS GNELISADTA
601: EDLKMKEKRK REREKNLPRK KRRKLEAARE MLEDNEGDED DEEEDGEDQK RGRSRGKDKK KKQEPDKKGL TLVDLGYRRA KAVKAKQRAI DSDKMERPTP
701: NKKQNLNRSK PRTTQPRNEG MKDLFKSDTS EKKEGRGGAA AAAKPKGKSK NSFKSKGR

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.