Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022336.1-P | Field mustard | nucleus | 97.89 | 98.06 |
| CDX99342 | Canola | nucleus | 96.84 | 97.01 |
| CDX95512 | Canola | nucleus | 93.85 | 93.68 |
| CDX82336 | Canola | nucleus | 94.2 | 93.54 |
| CDY18530 | Canola | nucleus | 92.62 | 92.78 |
| CDX75974 | Canola | nucleus | 93.5 | 91.41 |
| AT3G18600.1 | Thale cress | nucleus | 86.29 | 86.44 |
| PGSC0003DMT400063252 | Potato | nucleus | 66.08 | 66.43 |
| VIT_17s0000g04310.t01 | Wine grape | cytosol | 63.97 | 66.18 |
| Solyc03g114370.2.1 | Tomato | nucleus | 65.38 | 65.72 |
| GSMUA_Achr10P... | Banana | cytosol | 59.23 | 65.18 |
| KRH62970 | Soybean | nucleus | 61.51 | 64.58 |
| KRH03838 | Soybean | nucleus | 63.8 | 63.13 |
| KRH54795 | Soybean | nucleus | 60.46 | 62.89 |
| KRH56711 | Soybean | nucleus | 63.09 | 62.76 |
| CDY36514 | Canola | nucleus | 60.28 | 58.83 |
| CDY08740 | Canola | nucleus | 60.63 | 58.08 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 49.56 | 56.74 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 55.01 | 56.09 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 56.24 | 55.17 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 56.24 | 55.17 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 56.24 | 55.17 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 53.43 | 54.97 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 53.08 | 54.61 |
| EER90714 | Sorghum | nucleus | 59.4 | 54.25 |
| Os03t0802700-01 | Rice | nucleus | 56.24 | 54.24 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 51.67 | 53.85 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 53.6 | 52.95 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 50.97 | 51.88 |
| Os06t0535100-00 | Rice | nucleus | 52.9 | 51.72 |
| OQU76528 | Sorghum | nucleus | 54.13 | 51.42 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 51.49 | 51.13 |
| Zm00001d013056_P001 | Maize | nucleus | 58.52 | 50.76 |
| KXG37786 | Sorghum | nucleus | 40.25 | 50.55 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 53.25 | 50.33 |
| Zm00001d000431_P001 | Maize | plastid | 42.88 | 50.21 |
| Zm00001d023501_P001 | Maize | nucleus | 52.02 | 49.09 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 24.78 | 45.63 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 24.78 | 45.63 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 24.6 | 44.87 |
| CDY42845 | Canola | cytosol | 26.19 | 33.18 |
| CDY47007 | Canola | cytosol | 26.01 | 32.96 |
| CDX81759 | Canola | cytosol | 24.78 | 28.89 |
| CDX96202 | Canola | cytosol | 14.06 | 28.78 |
| CDY52844 | Canola | cytosol | 24.6 | 28.75 |
| CDY17287 | Canola | nucleus | 32.16 | 27.98 |
| CDY40740 | Canola | cytosol | 26.19 | 27.54 |
| CDX79974 | Canola | nucleus | 32.16 | 26.6 |
| CDX70149 | Canola | nucleus | 27.94 | 26.59 |
| CDY14112 | Canola | cytosol | 27.59 | 26.43 |
| CDY04952 | Canola | nucleus | 27.59 | 26.43 |
| CDY44780 | Canola | mitochondrion | 26.71 | 26.3 |
| CDY23886 | Canola | plasma membrane | 31.99 | 25.96 |
| CDY41525 | Canola | mitochondrion | 26.54 | 21.24 |
| CDX84428 | Canola | mitochondrion | 26.36 | 21.22 |
| CDY49890 | Canola | mitochondrion | 25.31 | 18.46 |
| CDY45370 | Canola | mitochondrion | 25.31 | 18.41 |
| CDX69933 | Canola | cytosol | 4.22 | 17.65 |
| CDY40519 | Canola | nucleus | 23.37 | 17.55 |
| CDX79187 | Canola | cytosol | 24.96 | 16.75 |
| CDX68066 | Canola | cytosol | 24.96 | 16.67 |
| CDY50846 | Canola | nucleus | 23.73 | 16.09 |
| CDY53643 | Canola | nucleus | 23.73 | 16.0 |
| CDY52719 | Canola | nucleus, plastid | 22.32 | 15.32 |
| CDY34979 | Canola | nucleus, plastid | 22.32 | 15.26 |
| CDY32273 | Canola | nucleus | 21.62 | 13.47 |
| CDY21554 | Canola | mitochondrion | 26.71 | 11.18 |
| CDX69935 | Canola | mitochondrion | 27.07 | 11.17 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078DSJ8 | EnsemblPlants:CDX92251 | ProteinID:CDX92251 | ProteinID:CDX92251.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00153969001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF305 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 |
| UniParc:UPI0004EE0297 | SEG:seg | : | : | : | : |
Description
BnaA05g21560D
Coordinates
chrLK031871:-:1079162..1082881
Molecular Weight (calculated)
64221.9 Da
IEP (calculated)
9.784
GRAVY (calculated)
-0.446
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MVELKKEKAS EELKKRVRKR NRGKKNDLQK VEDEEEETHN VEENVDGIQN KMEKKVKKVK KLQGRVKTDE DEEEEKKMVV VGKGIMTNET FESLDLSEQT
101: FEAIKVMGFE HMTQIQAGSI PPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSL TVSMVIGGNN
201: RRTEAQRIAN GSNLLIATPG RLLDHLQHTK GFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VQDLARVSLT SPVLVDVDDG
301: RRKVTNEGLE QGYCVVPSEK RLLLLISFLK KNLNKKIMVF FSTCKSVQFH AEIMKLINVE SCDIHGGLDQ NRRTKTFFDF MKAEKGILLC TDVAARGLDI
401: PAVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKKLLNV RSALEKYVAN DYNLNKTAKD AYRAYIAAYN
501: SHSLKDIFNV HRLDLQAVAL SFCFSSPPKV NLNIESGAGK VRKARNQQAR NGFSPYSPYG KVKSTPKEA
101: FEAIKVMGFE HMTQIQAGSI PPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSL TVSMVIGGNN
201: RRTEAQRIAN GSNLLIATPG RLLDHLQHTK GFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VQDLARVSLT SPVLVDVDDG
301: RRKVTNEGLE QGYCVVPSEK RLLLLISFLK KNLNKKIMVF FSTCKSVQFH AEIMKLINVE SCDIHGGLDQ NRRTKTFFDF MKAEKGILLC TDVAARGLDI
401: PAVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKKLLNV RSALEKYVAN DYNLNKTAKD AYRAYIAAYN
501: SHSLKDIFNV HRLDLQAVAL SFCFSSPPKV NLNIESGAGK VRKARNQQAR NGFSPYSPYG KVKSTPKEA
001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
Arabidopsis Description
RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.