CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013056_P001	Maize	nucleus	93.58	88.87
TraesCS5B01G120400.1	Wheat	nucleus	77.53	83.28
TraesCS5A01G114200.1	Wheat	nucleus	77.37	83.1
TraesCS5D01G127000.1	Wheat	nucleus	76.89	82.59
Os03t0802700-01	Rice	nucleus	77.37	81.69
GSMUA_Achr10P...	Banana	cytosol	61.8	74.47
OQU76528	Sorghum	nucleus	66.77	69.45
VIT_17s0000g04310.t01	Wine grape	cytosol	58.75	66.55
KRH62970	Soybean	nucleus	56.5	64.94
KRH56711	Soybean	nucleus	59.23	64.51
KRH03838	Soybean	nucleus	59.39	64.35
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	57.46	64.16
PGSC0003DMT400063252	Potato	nucleus	58.27	64.13
Solyc03g114370.2.1	Tomato	nucleus	57.78	63.6
KXG37786	Sorghum	nucleus	46.23	63.58
KRH54795	Soybean	nucleus	55.38	63.07
Bra022336.1-P	Field mustard	nucleus	54.41	59.68
Bra037574.1-P	Field mustard	nucleus	54.09	59.54
CDX99342	Canola	nucleus	54.25	59.51
CDX92251	Canola	nucleus	54.25	59.4
CDY18530	Canola	nucleus	54.09	59.33
CDX95512	Canola	nucleus	54.09	59.12
CDX82336	Canola	nucleus	54.09	58.81
AT3G18600.1	Thale cress	nucleus	53.61	58.8
CDX75974	Canola	nucleus	54.41	58.25
Bra001713.1-P	Field mustard	nucleus	54.09	55.61
CDY36514	Canola	nucleus	50.56	54.03
Bra024428.1-P	Field mustard	nucleus	51.04	53.81
CDY08740	Canola	nucleus	51.04	53.54
AT5G65900.1	Thale cress	nucleus	50.88	50.08
OQU93356	Sorghum	cytosol	23.11	31.72
KXG22990	Sorghum	cytosol	22.15	31.01
EES18259	Sorghum	nucleus	28.73	29.83
EES03287	Sorghum	cytosol	25.52	28.34
EER99761	Sorghum	cytosol	21.83	27.09
EES01082	Sorghum	mitochondrion, plastid	25.36	26.87
EES00264	Sorghum	nucleus, plastid	25.84	25.0
EER99450	Sorghum	nucleus	29.05	24.3
OQU76491	Sorghum	nucleus	25.04	23.78
EES07789	Sorghum	mitochondrion	25.36	19.2
KXG35997	Sorghum	nucleus	23.92	18.77
OQU80427	Sorghum	nucleus	23.27	17.0
OQU81941	Sorghum	nucleus	20.71	15.32

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8061145	UniProt:C5WX15	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	EnsemblPlants:EER90714	ProteinID:EER90714	ProteinID:EER90714.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SMART:SM01178	EnsemblPlantsGene:SORBI_3001G051500	SUPFAM:SSF52540	unigene:Sbi.7290
UniParc:UPI0001A820FC	RefSeq:XP_002463716.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:3796899..3801754

Molecular Weight (calculated)

70757.8 Da

IEP (calculated)

6.529

GRAVY (calculated)

-0.747

Length

623 amino acids

Sequence
(BLAST)

001: MCPAASSTSS AKPSKKRKQP VVAPPESDSE EDSVYDTASD DGEEEEERQE LESEDEDQEV EDGSEDDEED EDDDESEVEE EEVKEEKEKE EEEVKEKKEK
101: KKAKKAKKEE EKKVKKKSEG SGILSNKLFS ELPISELTAK AIREMNYTHL TQIQARSIPH LLEGKDVMGA AKTGSGKTLA FLIPAIELLY HLRFSSRNGT
201: GVIVVCPTRE LAIQTHNVAK ELMKYHSQTL GYVIGGNNRR SEADQLAKGV NLLVATPGRL LDHLQNTKSF IYKRLKCLVI DEADRILEQN FEEDMKQIFK
301: RLPQNRQTVL FSATQTPEVE KFAKLSFEKN EESKEKPVYV GVDDDKSKAT VEGLQQGYCV ISSEKRFLVL YAFLKKKQNK KIMVFFSSCN SVKFHAELLN
401: FLGIDCSDIH GKQKQQKRTT TFFSFCKAEK GILLCTNVAA RGLDIPDVDY IVQYDPPDEP KDYIHRVGRT ARGEKGKGSA LLFLLPEELK FLIYLKAAKV
501: TLTEYEFNQK NVPNLQSHLE NIVGENYFLN QSAKEAYRSY VLAYDSHSMK DIFNVHQLDL QKVAASFCFR NPPKVNLDLD SSAAKHRKKM RRVDGGKRHG
601: ISALNPYGRK DKDGGDKRQF ARF

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.