CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	70.28	84.71
Zm00001d023501_P001	Maize	nucleus	82.97	82.42
TraesCS5A01G042300.1	Wheat	nucleus	78.46	81.6
TraesCS6A01G356000.1	Wheat	nucleus	75.96	79.41
TraesCS6D01G292400.1	Wheat	nucleus	73.29	79.39
TraesCS6B01G342900.1	Wheat	nucleus	72.29	79.3
TraesCS6A01G312900.1	Wheat	nucleus	73.12	79.2
TraesCS5D01G050600.1	Wheat	nucleus	72.95	78.18
HORVU5Hr1G010160.3	Barley	cytosol	76.96	76.58
Os06t0535100-00	Rice	nucleus	66.94	68.9
KXG37786	Sorghum	nucleus	51.59	68.21
EER90714	Sorghum	nucleus	69.45	66.77
GSMUA_Achr10P...	Banana	cytosol	56.59	65.57
VIT_17s0000g04310.t01	Wine grape	cytosol	54.76	59.64
Solyc03g114370.2.1	Tomato	nucleus	55.26	58.48
KRH62970	Soybean	nucleus	52.75	58.3
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	53.92	57.89
PGSC0003DMT400063252	Potato	nucleus	54.59	57.77
KRH54795	Soybean	nucleus	52.59	57.59
KRH03838	Soybean	nucleus	54.76	57.04
KRH56711	Soybean	nucleus	54.26	56.82
Bra037574.1-P	Field mustard	nucleus	51.42	54.42
Bra022336.1-P	Field mustard	nucleus	51.59	54.4
CDY18530	Canola	nucleus	51.59	54.4
CDX95512	Canola	nucleus	51.59	54.21
CDX92251	Canola	nucleus	51.42	54.13
CDX99342	Canola	nucleus	51.25	54.05
CDX82336	Canola	nucleus	51.59	53.93
CDX75974	Canola	nucleus	51.92	53.44
AT3G18600.1	Thale cress	nucleus	50.58	53.35
Bra001713.1-P	Field mustard	nucleus	51.92	51.32
CDY36514	Canola	nucleus	48.25	49.57
Bra024428.1-P	Field mustard	nucleus	48.41	49.07
CDY08740	Canola	nucleus	48.41	48.82
AT5G65900.1	Thale cress	nucleus	48.08	45.5
OQU93356	Sorghum	cytosol	22.7	29.96
EES18259	Sorghum	nucleus	28.55	28.5
KXG22990	Sorghum	cytosol	20.87	28.09
EES03287	Sorghum	cytosol	26.04	27.81
EES01082	Sorghum	mitochondrion, plastid	26.04	26.53
EER99761	Sorghum	cytosol	21.87	26.1
OQU76491	Sorghum	nucleus	25.88	23.63
EES00264	Sorghum	nucleus, plastid	25.21	23.45
EER99450	Sorghum	nucleus	28.21	22.68
EES07789	Sorghum	mitochondrion	25.54	18.59
KXG35997	Sorghum	nucleus	22.54	17.0
OQU80427	Sorghum	nucleus	22.87	16.06
OQU81941	Sorghum	nucleus	21.04	14.96

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1W0VTB6	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:OQU76528	ProteinID:OQU76528	ProteinID:OQU76528.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	EnsemblPlantsGene:SORBI_3010G160500	SUPFAM:SSF52540	UniParc:UPI0009DC8E83	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:47235702..47240035

Molecular Weight (calculated)

67397.9 Da

IEP (calculated)

9.312

GRAVY (calculated)

-0.529

Length

599 amino acids

Sequence
(BLAST)

001: MYLSGPCSHL AQPLKNPVAP PESGESIHDA TCDGDGDEEK GKGEGNGREG MGKEKKKDEK EKGKGKRKRK EDEIGMEQGK NENKEEEEKV NKGNAGGILT
101: NKTFSELYIS EFTAKAITEM NYTHLTEIQA RSIPHLMLGS DVLGSAKTGS GKTLAFLIPA IELLHKACFT PRNGTGVIVV CPTRELAIQT HNVAKELMKY
201: HSQTIGYVIG GTNIRNEANQ IVKGINLLVA TPGRLLDHLR STSGFHYKRL QCLIIDEADR ILEQNFEEDM KQIFKRLPSD RQTVLFSAPQ TQKVVDFANF
301: TFGQNEERQR KLVYVGVDDS KLKPTVEGLQ QGYCVIPSEK RFLVLYAFLR RMQLREQGVK IMVFFSSCSS VKFHAELLNF FGIECYDIHG QLKQQKRTST
401: FFRFLKEKRG ILLCTNVAAR GLDIPDVDYI VQYDPPDDPK DYIHRVGRTA RGDEGKGSAL LFLLPEELKL LIYLQAANIS LTQYVFSEKH VPKSQSQLEN
501: IVGGNYFLNQ SAKEAYRSYL LAYNSHSMKD IFDVHQLDLT KVAASFCFKN PPKVNLDLES GASKHRKMRK VDSGKKHGIG PSNPYGRRAR SDSRQVARF

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.