Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18530 | Canola | nucleus | 95.79 | 96.13 |
| CDX92251 | Canola | nucleus | 93.68 | 93.85 |
| CDX99342 | Canola | nucleus | 93.33 | 93.66 |
| CDX82336 | Canola | nucleus | 94.04 | 93.54 |
| CDX75974 | Canola | nucleus | 92.98 | 91.07 |
| AT3G18600.1 | Thale cress | nucleus | 85.44 | 85.74 |
| PGSC0003DMT400063252 | Potato | nucleus | 65.09 | 65.55 |
| VIT_17s0000g04310.t01 | Wine grape | cytosol | 62.81 | 65.09 |
| Solyc03g114370.2.1 | Tomato | nucleus | 64.39 | 64.84 |
| KRH62970 | Soybean | nucleus | 60.88 | 64.02 |
| GSMUA_Achr10P... | Banana | cytosol | 57.89 | 63.83 |
| KRH03838 | Soybean | nucleus | 63.68 | 63.13 |
| KRH54795 | Soybean | nucleus | 60.18 | 62.71 |
| KRH56711 | Soybean | nucleus | 62.81 | 62.59 |
| CDY36514 | Canola | nucleus | 60.35 | 59.01 |
| CDY08740 | Canola | nucleus | 60.53 | 58.08 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 48.95 | 56.14 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 54.04 | 55.2 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 55.79 | 54.83 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 53.16 | 54.79 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 55.61 | 54.66 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 55.61 | 54.66 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 52.81 | 54.43 |
| EER90714 | Sorghum | nucleus | 59.12 | 54.09 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 51.75 | 54.03 |
| Os03t0802700-01 | Rice | nucleus | 55.09 | 53.22 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 53.33 | 52.78 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 50.7 | 51.7 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 51.93 | 51.66 |
| OQU76528 | Sorghum | nucleus | 54.21 | 51.59 |
| Os06t0535100-00 | Rice | nucleus | 51.93 | 50.86 |
| KXG37786 | Sorghum | nucleus | 40.0 | 50.33 |
| Zm00001d013056_P001 | Maize | nucleus | 57.72 | 50.15 |
| Zm00001d000431_P001 | Maize | plastid | 42.63 | 50.0 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 52.81 | 50.0 |
| Zm00001d023501_P001 | Maize | nucleus | 51.93 | 49.09 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 24.39 | 44.98 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 24.39 | 44.98 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 24.21 | 44.23 |
| CDY42845 | Canola | cytosol | 26.14 | 33.18 |
| CDY47007 | Canola | cytosol | 25.96 | 32.96 |
| CDX96202 | Canola | cytosol | 13.86 | 28.42 |
| CDX81759 | Canola | cytosol | 24.21 | 28.28 |
| CDY52844 | Canola | cytosol | 24.04 | 28.13 |
| CDY17287 | Canola | nucleus | 32.11 | 27.98 |
| CDY40740 | Canola | cytosol | 26.14 | 27.54 |
| CDY04952 | Canola | nucleus | 27.54 | 26.43 |
| CDY14112 | Canola | cytosol | 27.54 | 26.43 |
| CDX70149 | Canola | nucleus | 27.72 | 26.42 |
| CDX79974 | Canola | nucleus | 31.75 | 26.31 |
| CDY44780 | Canola | mitochondrion | 26.67 | 26.3 |
| CDY23886 | Canola | plasma membrane | 31.58 | 25.68 |
| CDY41525 | Canola | mitochondrion | 26.49 | 21.24 |
| CDX84428 | Canola | mitochondrion | 26.32 | 21.22 |
| CDY49890 | Canola | mitochondrion | 25.44 | 18.59 |
| CDY45370 | Canola | mitochondrion | 25.44 | 18.54 |
| CDY40519 | Canola | nucleus | 23.86 | 17.94 |
| CDX69933 | Canola | cytosol | 4.21 | 17.65 |
| CDX79187 | Canola | cytosol | 24.74 | 16.63 |
| CDX68066 | Canola | cytosol | 24.74 | 16.55 |
| CDY50846 | Canola | nucleus | 24.21 | 16.45 |
| CDY53643 | Canola | nucleus | 24.21 | 16.35 |
| CDY52719 | Canola | nucleus, plastid | 23.16 | 15.92 |
| CDY34979 | Canola | nucleus, plastid | 22.98 | 15.75 |
| CDY32273 | Canola | nucleus | 22.11 | 13.8 |
| CDY21554 | Canola | mitochondrion | 26.14 | 10.96 |
| CDX69935 | Canola | mitochondrion | 26.49 | 10.95 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078E336 | EnsemblPlants:CDX95512 | ProteinID:CDX95512 | ProteinID:CDX95512.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00101321001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF305 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 |
| UniParc:UPI0004EDD44A | SEG:seg | : | : | : | : |
Description
BnaC01g34040D
Coordinates
chrLK031889:+:857118..860984
Molecular Weight (calculated)
64339.1 Da
IEP (calculated)
9.545
GRAVY (calculated)
-0.415
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MVELEKKSSD VLKKRIRKRN RGKKNELQKV EVEEEETHNV EENADEIKKK VKKVKKLQGR GKIEEEEEEV EEEEEEKKMV VVAKGIMTNE TFESLDLSEQ
101: TFEAIKAMDF KHMTQIQAGS IPPLLEGKDV LGAARTGSGK TLAFLIPAVE LLFKERFSPL NGTGVIVICP TRELAIQTKN VAEELVKHHS LTVSMVIGGN
201: NRRSEAQRIA NGSNLLIATP GRLLDHLQHT KGFIFKHLKC LVIDEADRIL EENFEEDMNK ILKILPKTRQ TALFSATQTS KVQDLARVSL TSPVLVDVDD
301: GRRKVTNEGL EQGYCVVPSE KRLLLLISFL KKNLNKKIMV FFSTCKSVQF HAEIMKLINL DSCDIHGGLD QNRRTKTFFD FMKAEKGILL CTDVAARGLD
401: IPAVDWIIQY DPPDKPTEYI HRVGRTARGE GAKGKALLVL IPEELQFIRY LKAAKVPVKE LEFNEKKLLN VRSALEKYVA NDYNLNKIAK EAYRAYIAAY
501: NSHSLKDIFN VHRLDLQAVA LSFCFSSPPK VHLNIESGAG KVRKARNQQG RNGFSPYTPY GKAKSTPKEA
101: TFEAIKAMDF KHMTQIQAGS IPPLLEGKDV LGAARTGSGK TLAFLIPAVE LLFKERFSPL NGTGVIVICP TRELAIQTKN VAEELVKHHS LTVSMVIGGN
201: NRRSEAQRIA NGSNLLIATP GRLLDHLQHT KGFIFKHLKC LVIDEADRIL EENFEEDMNK ILKILPKTRQ TALFSATQTS KVQDLARVSL TSPVLVDVDD
301: GRRKVTNEGL EQGYCVVPSE KRLLLLISFL KKNLNKKIMV FFSTCKSVQF HAEIMKLINL DSCDIHGGLD QNRRTKTFFD FMKAEKGILL CTDVAARGLD
401: IPAVDWIIQY DPPDKPTEYI HRVGRTARGE GAKGKALLVL IPEELQFIRY LKAAKVPVKE LEFNEKKLLN VRSALEKYVA NDYNLNKIAK EAYRAYIAAY
501: NSHSLKDIFN VHRLDLQAVA LSFCFSSPPK VHLNIESGAG KVRKARNQQG RNGFSPYTPY GKAKSTPKEA
001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ
Arabidopsis Description
RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.