CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41525	Canola	mitochondrion	96.75	96.2
AT5G63630.2	Thale cress	mitochondrion, plastid	84.87	83.8
CDX69933	Canola	cytosol	13.44	69.85
CDY40740	Canola	cytosol	53.04	69.32
CDY44780	Canola	mitochondrion	55.16	67.47
Os01t0618500-01	Rice	nucleus	48.94	64.55
EES03287	Sorghum	cytosol	49.51	62.39
KRH47920	Soybean	nucleus	61.95	62.3
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	46.96	61.71
Zm00001d044208_P001	Maize	plastid	50.78	61.26
TraesCS3A01G222500.1	Wheat	nucleus, plastid	46.25	60.78
Os01t0618400-01	Rice	nucleus, plasma membrane	51.06	60.77
TraesCS3D01G230300.1	Wheat	nucleus	45.97	60.41
EES01082	Sorghum	mitochondrion, plastid	50.07	60.2
Zm00001d044203_P001	Maize	plasma membrane	47.67	60.18
TraesCS3B01G252700.2	Wheat	nucleus	40.59	60.17
TraesCS3D01G230400.2	Wheat	mitochondrion	49.93	60.03
TraesCS3A01G222700.1	Wheat	mitochondrion	49.79	59.86
TraesCS3B01G252600.1	Wheat	plastid	49.51	59.83
VIT_15s0046g01010.t01	Wine grape	plastid	63.65	58.52
OQU76491	Sorghum	nucleus	53.04	57.16
KRH06491	Soybean	nucleus	62.52	54.84
GSMUA_Achr10P...	Banana	mitochondrion	57.71	53.9
GSMUA_Achr8P04210_001	Banana	cytosol	54.03	51.62
Solyc01g095740.2.1	Tomato	nucleus	63.22	51.38
PGSC0003DMT400000611	Potato	mitochondrion	60.96	49.48
Zm00001d046097_P001	Maize	mitochondrion	56.58	42.73
Os06t0526600-01	Rice	mitochondrion	54.88	42.04
TraesCS7D01G328100.1	Wheat	mitochondrion	56.86	41.92
TraesCS7B01G232200.1	Wheat	mitochondrion	57.43	41.9
TraesCS7A01G350700.1	Wheat	mitochondrion	57.0	41.63
CDY49890	Canola	mitochondrion	41.3	37.44
CDY45370	Canola	mitochondrion	41.3	37.34
CDY21554	Canola	mitochondrion	69.17	35.98
CDX69935	Canola	mitochondrion	69.02	35.39
CDY47007	Canola	cytosol	18.53	29.18
CDY42845	Canola	cytosol	18.53	29.18
CDX82336	Canola	nucleus	21.78	26.88
CDY36514	Canola	nucleus	21.78	26.42
CDX99342	Canola	nucleus	21.22	26.41
CDX92251	Canola	nucleus	21.22	26.36
CDX95512	Canola	nucleus	21.22	26.32
CDX75974	Canola	nucleus	21.64	26.29
CDY18530	Canola	nucleus	21.07	26.23
CDY08740	Canola	nucleus	21.78	25.93
CDX81759	Canola	cytosol	17.4	25.2
CDX96202	Canola	cytosol	9.9	25.18
CDY52844	Canola	cytosol	17.11	24.85
CDX70149	Canola	nucleus	19.94	23.58
CDY04952	Canola	nucleus	19.8	23.57
CDY14112	Canola	cytosol	19.66	23.4
CDX79974	Canola	nucleus	20.37	20.93
CDY23886	Canola	plasma membrane	20.51	20.68
CDY17287	Canola	nucleus	18.95	20.49
CDY40519	Canola	nucleus	19.94	18.6
CDY50846	Canola	nucleus	20.65	17.4
CDY53643	Canola	nucleus	20.65	17.3
CDY52719	Canola	nucleus, plastid	19.94	17.01
CDY34979	Canola	nucleus, plastid	19.94	16.95
CDX79187	Canola	cytosol	17.82	14.86
CDX68066	Canola	cytosol	17.68	14.67
CDY32273	Canola	nucleus	18.53	14.35

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078DAR2	EnsemblPlants:CDX84428	ProteinID:CDX84428	ProteinID:CDX84428.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00141634001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF528	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0004EE1143	SEG:seg	:	:	:	:

Description

BnaC03g50720D

Coordinates

chrLK031837:-:1132196..1135065

Molecular Weight (calculated)

79286.8 Da

IEP (calculated)

9.463

GRAVY (calculated)

-0.520

Length

707 amino acids

Sequence
(BLAST)

001: MPLKFPRRIR FITHSLPRTT NNLASFSSGS RAYHCNTSSS SPLLSRIFSL NQLAIGSHIN FSSRPNGGEP RASRSLIEDE EELSNWVSDL RPGSLRVDDD
101: DDVDRSRGRN QGFRGTRNKV DSFRENLFSD RDKGSNFRSS PSSFRGRKER SLGRDREGYK GLRKQRRGDV LDGESSDEDV KSLVMGGIGD FLSEEDEEEE
201: DEDHEFLEKK AASAFGFDKQ KGVEARNDVK SSDSYLTKTR FDHYPLSPLS LKSLNDAGYE TMTVVQEVTL PIILKGKDVL AKAKTGTGKT VAFLLPSIEV
301: VVKSPPTSPD NKRPPILALV ICPTRELANQ AATEANTLLK HHPTIGVQVV IGGTRLGLEQ KRMQTNPCQI LVATPGRLKD HIENTPGFET RLKGVKVLVL
401: DEADHLLDMG FRKDIERILS AVPKERQTFL FSATVPEEVR QMCLVALRRD HEFINCVHEG TGETHQQVRQ THMIASLDKH FSLLYALLRA HIADNVDYKV
501: IVFCTTAMVT KLVADLLGEL NLNVREIHSR KPQSYRTRVS NEFRKSKGLI LVTSDVSARG VDYPDVTLVL QVGLPKDREQ YIHRLGRTGR KGKEGEGILL
601: LAPWEEYFLS SLKDLPITKS SLPSTDPETV KKVQKALCHV EMRNKEAAYQ AWLGYYNSQK MIGRDKERLV ELANEFSRSM GLDNPPAIPK LILGKMGLKN
701: VPGLRAK

Best Arabidopsis Sequence Match ( AT5G63630.2 )
(BLAST)

001: MPLNFPLRIR FFAHSLSGTH LSYNTSSSVP LLFRIFSSGL NHFEFGSRIN FSTRPNRDQP EFERRIRDGG EIRASKSLIE DEEELSNWVS GFRTGSSRGI
101: LKSDDEDEED RSRGRNQEKR GIRNQVDSFR NKRYGGDRER GFNSRIQGKS SEASFRGRKE TSFSRDREDE KGLRKREDLR LEDESSDEDV KSLVMGDIGD
201: LLSEDDEEED QDYDFLKKKA VSAFGFDKEN VIEADKTRNA NDSYLTKTRF DHYPLSPLSL KAIKDAGYET MTVVQEATLP IILKGKDVLA KAKTGTGKTV
301: AFLLPSIEVV VKSPPTSPDN KRPPILALVI CPTRELANQA ATEANTLLKY HPSIGVQVVI GGTRLGLEQK RMQTNPCQIL VATPGRLKDH IENTPGFATR
401: LKGVKVLVLD EADHLLDMGF RKDIERIISA VPKERQTFLF SATVPEEVRQ ICLVALRRDH EFVNCVHEGT IETHQQVRQM HMIASLDRHF SLLYTLLREH
501: IMGNVDYKVI VFCTTAMVTK LVADLLGELN LNVREIHSRK PQSYRTRVSN EFRKSKGLIL VTSDVSARGV DYPDVTLVLQ VGLPKDREQY IHRLGRTGRK
601: GKEGEGILLL APWEEYFLSS LKDLPITKSP LPSIDPETVK KVQKALCHVE MRNKEAAYQA WLGYYNSQKM IGRDKDRLVE LANEFSRSMG LDNPPAIPKL
701: ILGKMGLKNV PGLRAK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.