CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06491	Soybean	nucleus	94.74	82.63
Os01t0618500-01	Rice	nucleus	51.35	67.35
Bra009356.1-P	Field mustard	cytosol	53.63	67.2
Bra028652.1-P	Field mustard	nucleus	50.92	66.17
CDY40740	Canola	cytosol	50.78	65.99
AT5G08620.1	Thale cress	nucleus	52.2	65.19
EES03287	Sorghum	cytosol	51.78	64.88
VIT_15s0046g01010.t01	Wine grape	plastid	70.55	64.5
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	49.36	64.5
TraesCS3A01G222500.1	Wheat	nucleus, plastid	48.93	63.94
Zm00001d044203_P001	Maize	plasma membrane	50.92	63.93
TraesCS3B01G252700.2	Wheat	nucleus	43.24	63.73
TraesCS3D01G230300.1	Wheat	nucleus	48.51	63.38
CDY44780	Canola	mitochondrion	51.78	62.98
TraesCS3A01G222700.1	Wheat	mitochondrion	52.63	62.93
Zm00001d044208_P001	Maize	plastid	52.35	62.8
TraesCS3D01G230400.2	Wheat	mitochondrion	52.49	62.76
TraesCS3B01G252600.1	Wheat	plastid	52.2	62.73
Os01t0618400-01	Rice	nucleus, plasma membrane	52.92	62.63
EES01082	Sorghum	mitochondrion, plastid	51.92	62.07
CDX84428	Canola	mitochondrion	62.3	61.95
CDY41525	Canola	mitochondrion	62.16	61.46
AT5G63630.2	Thale cress	mitochondrion, plastid	61.74	60.61
OQU76491	Sorghum	nucleus	56.47	60.52
Bra038650.1-P	Field mustard	mitochondrion	62.16	58.82
GSMUA_Achr10P...	Banana	mitochondrion	61.02	56.67
Bra009355.1-P	Field mustard	mitochondrion, plastid	60.6	55.91
GSMUA_Achr8P04210_001	Banana	cytosol	57.18	54.32
Solyc01g095740.2.1	Tomato	nucleus	66.29	53.56
PGSC0003DMT400000611	Potato	mitochondrion	65.01	52.47
AT5G08610.1	Thale cress	mitochondrion, plastid	62.02	51.29
Zm00001d046097_P001	Maize	mitochondrion	59.46	44.66
Os06t0526600-01	Rice	mitochondrion	58.04	44.2
KRH41139	Soybean	nucleus	43.67	43.42
TraesCS7D01G328100.1	Wheat	mitochondrion	58.46	42.86
TraesCS7A01G350700.1	Wheat	mitochondrion	58.75	42.67
TraesCS7B01G232200.1	Wheat	mitochondrion	58.75	42.62
KRH59841	Soybean	nucleus	24.75	32.89
CDY21554	Canola	mitochondrion	59.74	30.91
CDX69935	Canola	mitochondrion	59.89	30.53
KRH62970	Soybean	nucleus	22.76	29.52
KRH65120	Soybean	cytosol	18.21	29.16
KRH54795	Soybean	nucleus	22.48	28.88
KRH56711	Soybean	nucleus	23.33	28.67
KRH03838	Soybean	nucleus	23.19	28.35
KRH48210	Soybean	nucleus	12.8	28.12
KRH37970	Soybean	cytosol	12.66	27.81
KRH37539	Soybean	nucleus	18.92	24.68
KRH12590	Soybean	nucleus	18.63	24.13
KRG97683	Soybean	nucleus	19.63	23.43
KRH43700	Soybean	cytosol	17.5	20.99
KRH13749	Soybean	cytosol, plastid	17.5	20.81
KRH31184	Soybean	nucleus	19.35	20.45
KRH73730	Soybean	nucleus	21.62	20.38
KRH46113	Soybean	nucleus	21.34	19.82
KRG98832	Soybean	nucleus	21.34	19.76
KRH37947	Soybean	plastid	16.07	19.19
KRH54980	Soybean	nucleus	4.84	19.1
KRH14417	Soybean	cytosol, nucleus	13.23	17.61
KRH48208	Soybean	nucleus	20.2	17.53
KRH65117	Soybean	plastid	19.35	16.5
KRH09570	Soybean	nucleus	17.78	16.09
KRH64859	Soybean	nucleus	17.78	16.09

Protein Annotations

EntrezGene:100795739	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004183	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_07G056600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KHW2	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH47920	ProteinID:KRH47920	ProteinID:KRH47920.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF528
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00023387FC	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:5017783..5024046

Molecular Weight (calculated)

78660.4 Da

IEP (calculated)

9.845

GRAVY (calculated)

-0.543

Length

703 amino acids

Sequence
(BLAST)

001: MPTKLFSQLH LLHPLLPMKP RTLPLLSRPF FFPSSKFLRT SPFKVRAFSS REKVPLRPSK SLIDDEADLS NWVDELRSGG PDEMRSGRGN EVRTGRRDRF
101: ADSGRFSRDD REREFRPPRN NNRASALGKR RGEDLRKGGQ SVGSRRKFQP RSDDDDNEVM NGRKLKGGGV GAFPSEDEDE DEDEESEGSE EEEILNKSRT
201: ALFGQQNVLN RRNTEPTPRP SSPGGGSDSY LSETRFDQCS ISPLSLKGVK DAGYEKMTVV QEATLPVILK GKDVLAKAKT GTGKTVAFLL PSIEVVAKSP
301: PSDRDHRRPP IAVLVICPTR ELASQAAAEA TKLLKYHPTI GVQVVIGGTR LALEQKRMQA NPCQILVATP GRLRDHTENT AGFATRLMGV KVLVLDEADH
401: LLDMGFRKDI EKIIAAVPKQ RQTLMFSATV PEEVRQVCHI ALRRDHEFIN TVQEGTEETH SQVCQTHLVA PLDKHFSLLY VLLKDHIADD VDYKVLVFCT
501: TAMVTRLVAE LLGELNLNVR EIHSRKPQSY RTRVSEEFRK SKGLILVTSD VSARGVDYPD VTLVIQVGLP ADREQYIHRL GRTGRRGKEG QGILLLAPWE
601: DFFLSTVKDL PIEKAPVVPS VDPDTKKKVE KALSNVEMKN KEAAYQAWLG YYNSNKKVGR DKYRLVELAN EFSRSMGLDN PPAIPKLVLG KMGLRNIPGL
701: RAK

Best Arabidopsis Sequence Match ( AT5G63630.2 )
(BLAST)

001: MPLNFPLRIR FFAHSLSGTH LSYNTSSSVP LLFRIFSSGL NHFEFGSRIN FSTRPNRDQP EFERRIRDGG EIRASKSLIE DEEELSNWVS GFRTGSSRGI
101: LKSDDEDEED RSRGRNQEKR GIRNQVDSFR NKRYGGDRER GFNSRIQGKS SEASFRGRKE TSFSRDREDE KGLRKREDLR LEDESSDEDV KSLVMGDIGD
201: LLSEDDEEED QDYDFLKKKA VSAFGFDKEN VIEADKTRNA NDSYLTKTRF DHYPLSPLSL KAIKDAGYET MTVVQEATLP IILKGKDVLA KAKTGTGKTV
301: AFLLPSIEVV VKSPPTSPDN KRPPILALVI CPTRELANQA ATEANTLLKY HPSIGVQVVI GGTRLGLEQK RMQTNPCQIL VATPGRLKDH IENTPGFATR
401: LKGVKVLVLD EADHLLDMGF RKDIERIISA VPKERQTFLF SATVPEEVRQ ICLVALRRDH EFVNCVHEGT IETHQQVRQM HMIASLDRHF SLLYTLLREH
501: IMGNVDYKVI VFCTTAMVTK LVADLLGELN LNVREIHSRK PQSYRTRVSN EFRKSKGLIL VTSDVSARGV DYPDVTLVLQ VGLPKDREQY IHRLGRTGRK
601: GKEGEGILLL APWEEYFLSS LKDLPITKSP LPSIDPETVK KVQKALCHVE MRNKEAAYQA WLGYYNSQKM IGRDKDRLVE LANEFSRSMG LDNPPAIPKL
701: ILGKMGLKNV PGLRAK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.