CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43700	Soybean	cytosol	91.54	92.32
VIT_19s0085g00510.t01	Wine grape	cytosol	56.85	68.71
PGSC0003DMT400029241	Potato	cytosol	53.64	65.09
Solyc10g005520.2.1	Tomato	cytosol	53.3	64.55
CDX81759	Canola	cytosol	52.12	63.11
CDY52844	Canola	cytosol	51.95	63.04
Bra026724.1-P	Field mustard	nucleus	51.61	62.76
AT1G16280.1	Thale cress	nucleus	49.92	60.08
GSMUA_Achr5P09910_001	Banana	nucleus	44.84	55.91
Os07t0633500-00	Rice	nucleus	36.21	53.1
EER99761	Sorghum	cytosol	45.01	52.99
Zm00001d022246_P001	Maize	cytosol	45.69	51.92
TraesCS2A01G154800.1	Wheat	cytosol	44.5	51.57
TraesCS2D01G160100.1	Wheat	cytosol	44.33	51.37
TraesCS2B01G179900.1	Wheat	cytosol	44.33	51.27
KRH65120	Soybean	cytosol	33.67	45.33
KRH48210	Soybean	nucleus	22.5	41.56
HORVU2Hr1G028120.2	Barley	plastid	31.81	37.83
KRH37970	Soybean	cytosol	13.2	24.38
KRH12590	Soybean	nucleus	22.34	24.31
KRH37539	Soybean	nucleus	22.17	24.3
KRH62970	Soybean	nucleus	22.0	23.99
KRH56711	Soybean	nucleus	23.18	23.95
KRH03838	Soybean	nucleus	22.84	23.48
KRH54795	Soybean	nucleus	21.49	23.22
KRG97683	Soybean	nucleus	22.0	22.07
KRH37947	Soybean	plastid	21.66	21.73
KRG98832	Soybean	nucleus	26.06	20.29
KRH46113	Soybean	nucleus	25.89	20.21
KRH48208	Soybean	nucleus	26.57	19.38
KRH31184	Soybean	nucleus	21.32	18.95
KRH65117	Soybean	plastid	25.89	18.57
KRH09570	Soybean	nucleus	23.86	18.15
KRH64859	Soybean	nucleus	23.52	17.89
KRH47920	Soybean	nucleus	20.81	17.5
KRH73730	Soybean	nucleus	22.0	17.43
KRH54980	Soybean	nucleus	5.25	17.42
KRH41139	Soybean	nucleus	19.97	16.69
KRH14417	Soybean	cytosol, nucleus	13.71	15.34
KRH06491	Soybean	nucleus	20.81	15.26
KRH59841	Soybean	nucleus	12.01	13.42

Protein Annotations

EntrezGene:100804060	MapMan:17.1.3.2.1.15	Gene3D:3.40.50.300	EMBL:ACUP02009783	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_15G261600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:K7ME11	EnsemblPlants:KRH13749	ProteinID:KRH13749	ProteinID:KRH13749.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF552	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000233C122	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:49391698..49397734

Molecular Weight (calculated)

66867.0 Da

IEP (calculated)

9.860

GRAVY (calculated)

-0.545

Length

591 amino acids

Sequence
(BLAST)

001: MDQSQLLHDP NFPLFKTPRK TPSSPAVTTT ATSKPPSTAA NPTSDGERIE DHPDETATVA DTDTDADAET FGDLGLAEWA VKTCRELGMR RPRGVQRRCI
101: PRVLEGRHVL GVDETGSGKT AAFALPILHR LAEHPFGVFA LVVTPTRELA FQLAEQFRAL GSAVHLRITV VVGGMDMLRQ AKELAARPHL VIATPGRIHA
201: LLRNNPDIPP VFSRTKFLVL DEADRVLDVG FQEELRFIFQ CLPENRQNLF FSATTTSNLQ KLRGRYQDKM YVYEAYEGFK TVETLKQQAI FIPKKVKDVY
301: LMHILDKMED MGIRSAIVFI STCRDCHRLS LMLEVLDQEA AALYSFKSQA QRLEALHQFK SGKVSILLAT DVASRGLDIP TVDLVINYDV PRFPRDYIHR
401: VGRTARAGRG GLALSLVTQN DVDLIHEIEA LIEKQLEMIE YKENDALSLM KKVFSAKNVA EMKMIDDGFE EKAKERKKQK LKMLEEKGLL TKRSKKRKRN
501: KEFAEEGKEQ KKEVLTARNV AEMKMMDEGG IEEKAEEGGK QKLRTEKGLS KKKKSKERRK ESAEEGKKQR KEEVEPLADI ATPKKRSKKR Q

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.