Factsheet for Bra026724.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52844	Canola	cytosol	99.18	98.97
AT1G16280.1	Thale cress	nucleus	87.65	86.76
VIT_19s0085g00510.t01	Wine grape	cytosol	67.9	67.48
PGSC0003DMT400029241	Potato	cytosol	66.67	66.53
Solyc10g005520.2.1	Tomato	cytosol	66.67	66.39
GSMUA_Achr5P09910_001	Banana	nucleus	53.09	54.43
Os07t0633500-00	Rice	nucleus	44.44	53.6
TraesCS2A01G154800.1	Wheat	cytosol	55.56	52.94
KRH43700	Soybean	cytosol	63.79	52.9
TraesCS2B01G179900.1	Wheat	cytosol	55.56	52.84
TraesCS2D01G160100.1	Wheat	cytosol	55.35	52.75
EER99761	Sorghum	cytosol	54.12	52.39
Zm00001d022246_P001	Maize	cytosol	55.76	52.12
KRH13749	Soybean	cytosol, plastid	62.76	51.61
Bra029342.1-P	Field mustard	cytosol	39.09	42.04
HORVU2Hr1G028120.2	Barley	plastid	41.36	40.44
Bra037574.1-P	Field mustard	nucleus	28.6	24.56
Bra022336.1-P	Field mustard	nucleus	28.6	24.47
Bra024428.1-P	Field mustard	nucleus	29.01	23.86
Bra001713.1-P	Field mustard	nucleus	28.81	23.1
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	28.6	22.1
Bra004584.1-P	Field mustard	nucleus	27.57	21.82
Bra028652.1-P	Field mustard	nucleus	24.07	21.63
Bra009356.1-P	Field mustard	cytosol	24.49	21.21
Bra028757.1-P	Field mustard	nucleus	25.51	20.88
Bra009114.1-P	Field mustard	nucleus	25.1	20.5
Bra040743.1-P	Field mustard	nucleus	31.48	17.51
Bra002946.1-P	Field mustard	nucleus	26.13	17.07
Bra003691.1-P	Field mustard	cytosol	28.81	16.43
Bra038650.1-P	Field mustard	mitochondrion	25.1	16.42
Bra009355.1-P	Field mustard	mitochondrion, plastid	25.1	16.01
Bra038492.1-P	Field mustard	nucleus	29.42	15.75
Bra027808.1-P	Field mustard	mitochondrion	24.9	15.49

Protein Annotations

MapMan:17.1.3.2.1.15	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra026724	EnsemblPlants:Bra026724.1	EnsemblPlants:Bra026724.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006364	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009553	GO:GO:0009561
GO:GO:0009791	GO:GO:0009987	GO:GO:0016787	GO:GO:0090406	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4ED64	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF552	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002542C4D	SEG:seg	:	:	:	:

Description

AT1G16280 (E=4e-212) | DEAD/DEAH box helicase, putative

Coordinates

chrA09:+:33408416..33410932

Molecular Weight (calculated)

54477.2 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.263

Length

486 amino acids

Sequence
(BLAST)

001: MEEPTSSSEE CGITIIAKPR KKTLNPQTQL PKLDPTPQFE KFTSTDATTS ASNFESLGLS EWASETCKEL GMRKPTPVQT HCIPKILSGR DVLGLAQTGS
101: GKTAAFALPI LNRLAEDPYG VFALVVTPTR ELAFQLAEQF KALGSCLNLR CCVIVGGMDM LTQTRSLISR PHVVITTPGR IKVLLENNPD VPPVFSRTKF
201: LVLDEADRVL DVGFQDELRT IFNCLPKTRQ TLLFSATMTS NLQTLLEHSS NKAYFYEAYE GLKTVDTLKQ QYIFIDKDAK ELYLVHILSQ MEDKEIRSAM
301: IFVSTCRTCQ RLSLMLEELE VENAALHSLN SQSLRLSALS KFKSGKVPIL LATDVASRGL DIPTVDLVIN YDIPRYPRDY VHRVGRTARA GRGGLAVSII
401: TETDVNLIHE IEAEVGKQME LYNYREITDS LEVTKVSKAK RVAMMKMLDD GFEDKVKDRR KLKRKTLADK GMLKKRSKTR KSAEEK

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.