Factsheet for VIT_19s0085g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005520.2.1	Tomato	cytosol	77.91	78.07
PGSC0003DMT400029241	Potato	cytosol	77.51	77.82
CDY52844	Canola	cytosol	68.1	68.38
CDX81759	Canola	cytosol	67.89	68.03
Bra026724.1-P	Field mustard	nucleus	67.48	67.9
AT1G16280.1	Thale cress	nucleus	66.46	66.19
GSMUA_Achr5P09910_001	Banana	nucleus	61.15	63.08
EER99761	Sorghum	cytosol	59.71	58.17
KRH43700	Soybean	cytosol	69.12	57.68
TraesCS2A01G154800.1	Wheat	cytosol	59.51	57.06
KRH13749	Soybean	cytosol, plastid	68.71	56.85
TraesCS2B01G179900.1	Wheat	cytosol	59.3	56.75
TraesCS2D01G160100.1	Wheat	cytosol	59.1	56.67
Os07t0633500-00	Rice	nucleus	46.22	56.08
Zm00001d022246_P001	Maize	cytosol	59.3	55.77
VIT_01s0010g01890.t01	Wine grape	nucleus	38.24	45.5
HORVU2Hr1G028120.2	Barley	plastid	44.17	43.46
VIT_11s0065g01090.t01	Wine grape	cytosol	39.67	35.99
VIT_17s0000g04310.t01	Wine grape	cytosol	27.81	24.73
VIT_11s0016g00630.t01	Wine grape	nucleus	28.43	23.17
VIT_13s0067g01900.t01	Wine grape	nucleus	27.4	22.52
VIT_18s0001g14540.t01	Wine grape	nucleus	32.92	21.99
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	7.16	21.88
VIT_05s0049g02360.t01	Wine grape	nucleus	33.54	20.81
VIT_15s0046g01010.t01	Wine grape	plastid	27.61	17.56
VIT_02s0025g03950.t01	Wine grape	mitochondrion	24.13	15.65

Protein Annotations

EntrezGene:100267286	wikigene:100267286	MapMan:17.1.3.2.1.15	Gene3D:3.40.50.300	EMBL:AM441941	ProteinID:CAN65105
ProteinID:CAN65105.1	ProteinID:CBI24175	ProteinID:CBI24175.3	UniProt:D7T0V5	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN595503
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EntrezGene:LOC100267286	wikigene:LOC100267286	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00015CCCB8
ArrayExpress:VIT_19s0085g00510	EnsemblPlantsGene:VIT_19s0085g00510	EnsemblPlants:VIT_19s0085g00510.t01	RefSeq:XP_002263207	RefSeq:XP_002263207.2	SEG:seg

Description

No Description!

Coordinates

chr19:+:22896971..22905063

Molecular Weight (calculated)

54699.6 Da

IEP (calculated)

9.393

GRAVY (calculated)

-0.204

Length

489 amino acids

Sequence
(BLAST)

001: MDEETLVDEN FPLFSKRKPT PKPSKNSTTT AQNPNPEQPL TRTTNPTSPS STFADLGLAE WAVQACKELG MRRPTPVQHH CIPRILAGDD VLGLAQTGSG
101: KTAAFALPIL HRLAEDPFGV FALVVTPTRE LAYQLAEQFR ALGSCLHLRC AVVVGGMDMI NQAQTLMQRP HVVIATPGRV KVLLEQNPDI PAVFARTKFL
201: VLDEADRVLD VGFEEELRVV FQCLPKNRQT LLFSATMTSD LQTLLELSSN KAYFYEAYEG FKTVESLKQQ YIFVPKNVKD VYLLHILSKM EEMGIRSAII
301: FVSTCRSCHL LSLLLEELDL EVAALHSFKS QSLRLAAVHR FKSGQVPILL ATDVASRGLD IPTVDLVVNY DIPRYPRDYV HRVGRTARAG RGGLSLSIVT
401: QNDVDLIHEI EAVLGKQLDK FDCKEKEVLD NITKVYKARR VATMKMMDDG FEEKAKARKA QKLKTLAEKG LLKKKTRKRK REKASKIGD

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.