Factsheet for VIT_13s0067g01900.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97683	Soybean	nucleus	84.54	85.4
Solyc02g078880.2.1	Tomato	nucleus	78.15	78.28
PGSC0003DMT400057606	Potato	nucleus	78.49	74.96
KRH31184	Soybean	nucleus	82.86	74.14
Bra028757.1-P	Field mustard	nucleus	72.61	72.73
CDY04952	Canola	nucleus	72.61	72.73
CDY14112	Canola	cytosol	72.44	72.56
AT5G05450.1	Thale cress	nucleus	72.1	72.34
Bra009114.1-P	Field mustard	nucleus	70.25	70.25
CDX70149	Canola	nucleus	70.59	70.23
GSMUA_Achr8P01870_001	Banana	cytosol	73.61	67.28
AT1G71370.1	Thale cress	nucleus	61.68	65.77
Zm00001d024719_P001	Maize	nucleus	36.13	63.61
Zm00001d027279_P001	Maize	nucleus	30.25	63.16
CDX96202	Canola	cytosol	29.41	62.95
Os01t0164500-01	Rice	plastid	68.4	62.91
AT1G71280.1	Thale cress	nucleus	49.08	62.8
EES00264	Sorghum	nucleus, plastid	67.23	62.11
TraesCS3A01G100100.1	Wheat	plastid	66.72	61.65
TraesCS3B01G116900.1	Wheat	plastid	66.39	61.43
TraesCS3D01G100800.1	Wheat	plastid	66.05	61.12
HORVU3Hr1G018130.7	Barley	plastid	66.39	58.35
Zm00001d041799_P001	Maize	cytosol	24.71	55.68
Zm00001d039746_P001	Maize	nucleus	66.89	54.9
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	27.9	45.86
VIT_01s0010g01890.t01	Wine grape	nucleus	21.34	30.9
VIT_17s0000g04310.t01	Wine grape	cytosol	26.89	29.09
VIT_19s0085g00510.t01	Wine grape	cytosol	22.52	27.4
VIT_11s0065g01090.t01	Wine grape	cytosol	23.53	25.97
VIT_11s0016g00630.t01	Wine grape	nucleus	23.36	23.17
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	5.88	21.88
VIT_18s0001g14540.t01	Wine grape	nucleus	25.21	20.49
VIT_15s0046g01010.t01	Wine grape	plastid	23.87	18.47
VIT_05s0049g02360.t01	Wine grape	nucleus	23.36	17.64
VIT_02s0025g03950.t01	Wine grape	mitochondrion	22.35	17.64

Protein Annotations

EntrezGene:100260487	wikigene:100260487	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB49829	ProteinID:CCB49829.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	UniProt:F6HCA5	EMBL:FN595514	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EntrezGene:LOC100260487	wikigene:LOC100260487	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF2	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	UniParc:UPI00019845A8	ArrayExpress:VIT_13s0067g01900	EnsemblPlantsGene:VIT_13s0067g01900	EnsemblPlants:VIT_13s0067g01900.t01	unigene:Vvi.22408
RefSeq:XP_002273715	RefSeq:XP_002273715.1	SEG:seg	:	:	:

Description

RNA helicase [Source:UniProtKB/TrEMBL;Acc:F6HCA5]

Coordinates

chr13:-:1038007..1044951

Molecular Weight (calculated)

66202.4 Da

IEP (calculated)

9.424

GRAVY (calculated)

-0.261

Length

595 amino acids

Sequence
(BLAST)

001: MAAAPADSSD PNRALTTTRF SELNPPLSEP VLEALTQSGF HFCTPVQAAT IPLLCSFKDV AVDAATGSGK TLAFVVPLVE ILRRASSAPK PHQVLGVILS
101: PTRELSSQIY NVAQPFISTL PNVKSVLLVG GVEVKSDLKK IEEEGANLLI GTPGRLYDIM ERMDVLDFRN LEILILDEAD RLLDMGFQKQ ITSIIARLPK
201: LRRTGLFSAT QTEAVEELSK AGLRNPVRVE VRAEAKSLND SVSSQQLASS KTPSGLNIEY LECEADKKPS QLVDLLIKNK SKKIIIYFMT CACVDYWGVI
301: LPRLSVLKGF SLIPLHGKMK QTAREKALAS FTSLSSGILL CTDVAARGLD IPGVDCIVQY DPPQDPNVFI HRVGRTARMG RQGSAVVFLL PKEEAYVEFL
401: RIRRVPLQGM TCSSDASDVV PQIRSAAKKD RDVMEKGLRA FVSFVRAYKE HHCSYIFRWK ELEIGKLAMG YGLLQLPSMP EVKHHSLSTE GFTPVEDINF
501: EEIKYKDKSR EKQRKKNLQA KKAVQDQEPK PQKPNKTPHT APTVMRKKTA KQRRTAQTIE DEDDLAREYR LLKKLKKGTI DESEFAKLTG TEELL

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.