Factsheet for Os01t0164500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00264	Sorghum	nucleus, plastid	82.84	83.23
Zm00001d024719_P001	Maize	nucleus	42.81	81.95
TraesCS3A01G100100.1	Wheat	plastid	81.45	81.83
TraesCS3B01G116900.1	Wheat	plastid	80.99	81.49
TraesCS3D01G100800.1	Wheat	plastid	80.83	81.34
Zm00001d027279_P001	Maize	nucleus	35.39	80.35
HORVU3Hr1G018130.7	Barley	plastid	80.37	76.81
Zm00001d041799_P001	Maize	cytosol	30.29	74.24
Zm00001d039746_P001	Maize	nucleus	82.84	73.93
VIT_13s0067g01900.t01	Wine grape	nucleus	62.91	68.4
KRG97683	Soybean	nucleus	61.67	67.74
GSMUA_Achr8P01870_001	Banana	cytosol	64.61	64.21
Solyc02g078880.2.1	Tomato	nucleus	58.11	63.3
AT5G05450.1	Thale cress	nucleus	57.81	63.07
Bra028757.1-P	Field mustard	nucleus	57.5	62.63
Bra009114.1-P	Field mustard	nucleus	56.41	61.34
KRH31184	Soybean	nucleus	61.67	60.0
PGSC0003DMT400057606	Potato	nucleus	57.65	59.87
AT1G71370.1	Thale cress	nucleus	50.39	58.42
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	31.68	56.63
AT1G71280.1	Thale cress	nucleus	40.65	56.56
Os03t0669000-01	Rice	cytosol, nucleus, plastid	21.64	29.66
Os07t0660000-00	Rice	cytosol	20.25	29.44
Os03t0802700-01	Rice	nucleus	25.5	27.97
Os06t0535100-00	Rice	nucleus	24.42	27.15
Os01t0618500-01	Rice	nucleus	22.41	27.05
Os07t0633500-00	Rice	nucleus	16.07	25.81
Os05t0110500-02	Rice	nucleus	23.03	25.21
Os01t0618400-01	Rice	nucleus, plasma membrane	21.95	23.91
Os12t0481100-01	Rice	nucleus	23.18	18.7
Os07t0517000-01	Rice	nucleus	14.99	18.51
CDX69933	Canola	cytosol	3.86	18.38
Os02t0826100-01	Rice	cytosol	22.26	17.76
Os08t0416100-01	Rice	nucleus	21.33	16.22
Os04t0510400-01	Rice	nucleus	20.56	15.99
Os06t0526600-01	Rice	mitochondrion	20.71	14.52

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4324413	EMBL:AB118002	EMBL:AK068747	EMBL:AK103737
ProteinID:BAB64789.1	ProteinID:BAC00580.1	ProteinID:BAF04016.1	ProteinID:BAS70556.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	ProteinID:EAZ10665.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os01g0164500	EnsemblPlants:Os01t0164500-01
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2	UniProt:Q761Z9	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI00000ABE33
RefSeq:XP_015620894.1	SEG:seg	:	:	:	:

Description

brassinosteroid receptor kinase (BRI1)-interacting protein 115, BRI1-interacting protein 115, brassinosteroid receptor kinase-interacting protein 115, RNA helicase 18Similar to ATP-dependent RNA helicase-like protein. (Os01t0164500-01)

Coordinates

chr1:-:3328572..3331963

Molecular Weight (calculated)

72221.5 Da

IEP (calculated)

10.016

GRAVY (calculated)

-0.467

Length

647 amino acids

Sequence
(BLAST)

001: MSSSSSSLAA AAARKRALTE QRFSELSPAL SPEVVKALKG GGFRRCTPVQ AAAIPLLLSH KDVAVDAATG SGKTLAFVVP VVEILRRRPS PPKPHEVLGI
101: IISPTRELSS QIYNVAQPFF ATLKGVSSML LVGGFDIKAE LKKLEEEGAN ILVGTPGKLF DVMERLDTLN YKNLEILILD EADRLLDLGF QKQITSIISK
201: LPKLRRTGLF SATQTEAVKE LAKAGLRNPV RVEVKTEVKP TGKDGAQQEL GPSKTPLGLR LEYMICEASN KSSQLVDFLV QNNGKKIMVY FATCACVDYW
301: AIVLPLLDSL KGSPIIPYHG KMKQGPREKA LASFSALSSG ILVCTDVAAR GLDIPHVDLI VQYDPPQDPN VFIHRAGRTA RYDQEGDAIV FLLPKEDTYV
401: EFLKRRGVPL TERECSTNAV DIVPQIRSAA LEDRNVMEKG LTAFVSFVRA YKEHHCSYIF SWKDLEIGRL GMEYGLLQIP SMPEVKHHSL SLEGFTPVKD
501: VDVTKIKYKD KAREKQRQKT LKRKAEELAL RPEIEKRRKA PEKPEKPKRK KTGKQRQAVQ TKEDMDELAN EYRLLKKLKR GVIDEDEYEK LTGFGESDDD
601: DSSDGGDSDL DERKERGNKV LKKIKQKGKA KGSRRFEGRS KQKTRRR

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.