Factsheet for Os02t0826100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07789	Sorghum	mitochondrion	79.28	78.13
Zm00001d018516_P002	Maize	mitochondrion	78.18	77.51
TraesCS6B01G455000.1	Wheat	cytosol	79.65	76.63
TraesCS6D01G392700.1	Wheat	cytosol	79.28	76.37
GSMUA_Achr3P14380_001	Banana	cytosol	41.55	75.39
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	70.28	75.0
TraesCS6A01G409100.1	Wheat	cytosol	79.41	72.69
VIT_02s0025g03950.t01	Wine grape	mitochondrion	56.84	61.14
KRH41139	Soybean	nucleus	53.27	61.1
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	11.34	57.5
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	55.24	55.58
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	54.99	55.4
Bra027808.1-P	Field mustard	mitochondrion	52.4	54.42
CDY49890	Canola	mitochondrion	52.28	54.36
CDY45370	Canola	mitochondrion	52.4	54.35
AT1G63250.1	Thale cress	mitochondrion	52.28	53.13
KRH59841	Soybean	nucleus	34.4	52.74
Os01t0618500-01	Rice	nucleus	34.4	52.05
AT2G07750.1	Thale cress	plastid	51.91	49.82
Os01t0618400-01	Rice	nucleus, plasma membrane	34.16	46.63
Os06t0526600-01	Rice	mitochondrion	36.99	32.5
Os07t0633500-00	Rice	nucleus	13.93	28.04
Os07t0660000-00	Rice	cytosol	15.04	27.42
Os06t0535100-00	Rice	nucleus	18.74	26.12
Os03t0669000-01	Rice	cytosol, nucleus, plastid	15.04	25.85
Os03t0802700-01	Rice	nucleus	18.5	25.42
Os05t0110500-02	Rice	nucleus	17.39	23.86
Os01t0164500-01	Rice	plastid	17.76	22.26
Os12t0481100-01	Rice	nucleus	18.87	19.08
KRH54980	Soybean	nucleus	3.82	17.42
Os04t0510400-01	Rice	nucleus	16.65	16.23
Os08t0416100-01	Rice	nucleus	15.91	15.16
Os07t0517000-01	Rice	nucleus	8.75	13.55

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4331214	EMBL:AK101090	ProteinID:BAD23043.1	ProteinID:BAF10498.1
ProteinID:BAS81691.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EEE58088.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlantsGene:Os02g0826100	EnsemblPlants:Os02t0826100-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF324	UniProt:Q6K7R9	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00003B0510	RefSeq:XP_015626491.1	SEG:seg

Description

RNA helicase 48Similar to RNA helicase (Fragment). (Os02t0826100-01)

Coordinates

chr2:-:35502083..35507042

Molecular Weight (calculated)

91807.5 Da

IEP (calculated)

10.008

GRAVY (calculated)

-0.491

Length

811 amino acids

Sequence
(BLAST)

001: MGGGPRTFPG GLSKWQHKRM HEKLARHKER GLLRHEKQLY LARLRSEIRA SRLPAAGASP PDDGDGPTSS RAHIRALADR FLLPGAEDLW NEDDGPIHRA
101: DRPRPPRRIV SVGGNGGDRR KLDSTKQELP RGGKEPRLAA FNPRRDFQTA APWWWQWSSS SAIPSRTKEA SFCFFGPKRS YSVMPLFQAH QESSGTSMVP
201: LIARGLASAR IAPSQLNGER FYSFAAGRFG RKLRPDSSDE DDEDISTAKK DMRFARFGAS SEEESGYDEL EARSAIRKKW SSAALRNCDM KKERRALKSY
301: EEENNDLAGS FRELREEIKN REVLGAERRR YESRGESLFT NKRFEECGIS PLTVKALTDA GYVQTTVVQE TALPMCLEGK DVLVKAKTGT GKSAAFLLPA
401: IESVLNAMKS HTNHRVSPIF SLILCPTREL AIQLTAEANV LLKYHQGIGV QSLIGGTRFK LDQRRLESDP CQILVATPGR LLDHIENKSS FSVRLMGLKL
501: LVLDEADHLL DLGFRTDIEK IVDSLPRQRQ TLLFSATIPK EVRRVSQLVL KRDHVFVDTV GLGAVETPTK VEQLYLVMPH ELHFHMVYRL LREHIDQEVD
601: YKVIVFCTTA MVTEFMYIML RDLKLNVREI HSRKPQLYRT RISEEFRDSS RLILVTSDVS TRGVNYPGVT LVIQVGVPSD REHYIHRLGR TGREGKSGKG
701: ILLLAPWEEY FLNEIHDLPV QKSQTPNIDE EMKRKVDGSI KIVDMSIKEA AYHAWLGYYN SIGDVGRDKT MLVDLANRFC KSIGLEKPPA LYRKTALKMG
801: LKDVPGIRIR K

Best Arabidopsis Sequence Match ( AT2G07750.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASS PVGLRRLFCS NASRFSFLSP PARRQAEPST NLFHSGLSKR ITSERSLWNR IFSRNMGGGP RTFPGGLNKW QWKRMHEKKA
101: REKENKLLDQ EKQLYEARIR TEIRAKMWGH PDSGEKTAKL KQSHGPMSPK EHIKTLADRF MKAGADDLWN DNDGPVKKFD QGSRSCSDSI DSTPIDVRRL
201: VSATCDSMGK HRVLDSSRRG FSSMSRFKRN ESSCDEGDDV DAKKLDTLSP FSPKFSGTKE KVKSSTSVVG VIRNKGLFGR RKFRKNDSST EEDSDEEGNE
301: GKMIGWMDLR KTGSSASLGN HDIKLTKRVN RNVTDEELYP PLDINRVRED LSKKQSVDNV MEEKQEPHDS IYSAKRFDES CISPLTLKAL SASGIVKMTR
401: VQDATLSECL DGKDALVKAK TGTGKSMAFL LPAIETVLKA MNSGKGVHKV APIFVLILCP TRELASQIAA EGKALLKNHD GIGVQTLIGG TRFRLDQQRL
501: ESEPCQILIA TPGRLLDHIE NKSGLTSRLM ALKLFIVDEA DLLLDLGFKR DVEKIIDCLP RQRQSLLFSA TIPKEVRRVS QLVLKRDHSY IDTIGLGCVE
601: THDKVKQSCI VAPHESHFHL VPHLLKEHIN NMPDYKIIVF CSTGMVTSLM YTLLREMKLN VREIHARKPQ LHRTCVSDEF KESNRLILVT SDVSARGMNY
701: PDVTLVIQVG IPSDREQYIH RLGRTGREGK GGKGLLLIAP WERYFLDELK DLPLEPIPAP DLDSRVKHQV DQSMAKIDTS IKEAAYHAWL GYYNSVRETG
801: RDKTTLAELA NRFCHSIGLE KPPALFRRTA VKMGLKGISG IPIRK

Arabidopsis Description

RH33Putative DEAD-box ATP-dependent RNA helicase 33 [Source:UniProtKB/Swiss-Prot;Acc:O80792]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.