Factsheet for Os07t0633500-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 20607362

nucleus: 23777608

gfp PMID: 20607362 doi

CK Huang, SM Yu, CA Lu

Department of Life Science, National Central University, Zhongli, Taoyuan County, Taiwan, ROC.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G160100.1	Wheat	cytosol	80.4	63.53
TraesCS2A01G154800.1	Wheat	cytosol	80.4	63.53
TraesCS2B01G179900.1	Wheat	cytosol	80.4	63.41
EER99761	Sorghum	cytosol	77.17	61.95
Zm00001d022246_P001	Maize	cytosol	76.92	59.62
HORVU2Hr1G028120.2	Barley	plastid	57.57	46.68
VIT_19s0085g00510.t01	Wine grape	cytosol	56.08	46.22
PGSC0003DMT400029241	Potato	cytosol	55.34	45.79
Solyc10g005520.2.1	Tomato	cytosol	54.84	45.29
CDY52844	Canola	cytosol	53.85	44.56
Bra026724.1-P	Field mustard	nucleus	53.6	44.44
CDX81759	Canola	cytosol	53.35	44.06
AT1G16280.1	Thale cress	nucleus	52.85	43.38
GSMUA_Achr5P09910_001	Banana	nucleus	48.88	41.56
KRH43700	Soybean	cytosol	53.35	36.69
KRH13749	Soybean	cytosol, plastid	53.1	36.21
Os03t0669000-01	Rice	cytosol, nucleus, plastid	36.48	31.14
Os07t0660000-00	Rice	cytosol	34.24	31.01
Os01t0618500-01	Rice	nucleus	27.54	20.71
Os03t0802700-01	Rice	nucleus	28.54	19.49
Os06t0535100-00	Rice	nucleus	27.79	19.24
Os01t0618400-01	Rice	nucleus, plasma membrane	27.05	18.35
Os05t0110500-02	Rice	nucleus	26.55	18.1
Os01t0164500-01	Rice	plastid	25.81	16.07
Os12t0481100-01	Rice	nucleus	31.76	15.96
Os04t0510400-01	Rice	nucleus	30.52	14.78
Os02t0826100-01	Rice	cytosol	28.04	13.93
Os08t0416100-01	Rice	nucleus	26.05	12.34
Os06t0526600-01	Rice	mitochondrion	27.79	12.13
Os07t0517000-01	Rice	nucleus	11.17	8.59

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0P0X959	ProteinID:BAT02795.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009553	GO:GO:0009561	GO:GO:0009791	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	GO:GO:0090406	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlantsGene:Os07g0633500	EnsemblPlants:Os07t0633500-00	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF552
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000393B7F9
SEG:seg	:	:	:	:	:

Description

RNA helicase 36Hypothetical conserved gene. (Os07t0633500-00)

Coordinates

chr7:-:26292464..26296167

Molecular Weight (calculated)

44066.8 Da

IEP (calculated)

5.867

GRAVY (calculated)

-0.096

Length

403 amino acids

Sequence
(BLAST)

001: MEVDGEARPF LLFSKPKSSK KKPKQEAEPQ VHTQPEEPPN PSPSPAIEPD LRDSDEAPAA AVTEHAGDDA AAAAVPSTFA ELGLSQWLVD VCDSLGMRVP
101: TAVQRRCIPR ALEGRDVLGI AETGSGKTAA FALPILHRLG EDPYGVAALA LAPTRELAAQ LAEQFRALGA PLGLRCLAAI GGFDSLGQAK GLARRPHVVV
201: ATPGRIATLI NDDPDLAKVF ARTKFLVLDE ADRVLDINFE EDLRVIFGSL PKKRQTFLFS ATISDNLRSL LELSGNNSYF FEAYEGFKTV DTLKQLYIHV
301: PPDAKELYLF YLLSKMNEDN IRSVIVFVST CRTCQYLDFL LEELGHPAVS LHSHKPQSRR LAALHNFKSS KVPVLLATDV ASRGLDIQTV DLVINYDVPR
401: CFN

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.