Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81759 | Canola | cytosol | 87.37 | 87.91 |
| CDY52844 | Canola | cytosol | 87.17 | 87.89 |
| Bra026724.1-P | Field mustard | nucleus | 86.76 | 87.65 |
| VIT_19s0085g00510.t01 | Wine grape | cytosol | 66.19 | 66.46 |
| PGSC0003DMT400029241 | Potato | cytosol | 64.15 | 64.68 |
| Solyc10g005520.2.1 | Tomato | cytosol | 63.95 | 64.34 |
| GSMUA_Achr5P09910_001 | Banana | nucleus | 51.53 | 53.38 |
| Os07t0633500-00 | Rice | nucleus | 43.38 | 52.85 |
| EER99761 | Sorghum | cytosol | 52.75 | 51.59 |
| TraesCS2A01G154800.1 | Wheat | cytosol | 53.56 | 51.57 |
| KRH43700 | Soybean | cytosol | 61.51 | 51.54 |
| TraesCS2B01G179900.1 | Wheat | cytosol | 53.56 | 51.47 |
| TraesCS2D01G160100.1 | Wheat | cytosol | 53.36 | 51.37 |
| Zm00001d022246_P001 | Maize | cytosol | 54.18 | 51.15 |
| KRH13749 | Soybean | cytosol, plastid | 60.08 | 49.92 |
| AT5G60990.1 | Thale cress | nucleus | 37.47 | 40.35 |
| HORVU2Hr1G028120.2 | Barley | plastid | 39.31 | 38.83 |
| AT3G18600.1 | Thale cress | nucleus | 27.49 | 23.77 |
| AT5G08620.1 | Thale cress | nucleus | 25.46 | 22.2 |
| AT2G40700.1 | Thale cress | nucleus | 27.49 | 22.13 |
| AT1G71370.1 | Thale cress | nucleus | 25.05 | 22.04 |
| AT5G05450.1 | Thale cress | nucleus | 25.25 | 20.91 |
| AT5G65900.1 | Thale cress | nucleus | 26.88 | 20.85 |
| AT1G71280.1 | Thale cress | nucleus | 19.35 | 20.43 |
| AT4G16630.1 | Thale cress | nucleus | 31.57 | 19.65 |
| AT5G63630.2 | Thale cress | mitochondrion, plastid | 26.07 | 17.88 |
| AT5G54910.1 | Thale cress | nucleus | 25.05 | 16.64 |
| AT3G16840.2 | Thale cress | nucleus | 27.9 | 16.57 |
| AT1G77030.1 | Thale cress | nucleus | 28.31 | 16.45 |
| AT1G63250.1 | Thale cress | mitochondrion | 25.66 | 15.79 |
| AT5G08610.1 | Thale cress | mitochondrion, plastid | 25.66 | 14.82 |
| AT2G07750.1 | Thale cress | plastid | 25.46 | 14.79 |
Protein Annotations
| MapMan:17.1.3.2.1.15 | Gene3D:3.40.50.300 | EntrezGene:838197 | ProteinID:AAD34681.1 | ProteinID:AEE29431.1 | ArrayExpress:AT1G16280 |
| EnsemblPlantsGene:AT1G16280 | RefSeq:AT1G16280 | TAIR:AT1G16280 | RefSeq:AT1G16280-TAIR-G | EnsemblPlants:AT1G16280.1 | TAIR:AT1G16280.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006364 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009553 | GO:GO:0009561 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | GO:GO:0090406 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_173078.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000282 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 |
| PO:PO:0009066 | PO:PO:0009073 | PO:PO:0020003 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF78 | UniProt:Q9SA27 | Symbol:RH36 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000009E90E | SEG:seg |
Description
RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
Coordinates
chr1:-:5567742..5570679
Molecular Weight (calculated)
54838.7 Da
IEP (calculated)
9.268
GRAVY (calculated)
-0.298
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.