Factsheet for GSMUA_Achr5P09910_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0085g00510.t01	Wine grape	cytosol	63.08	61.15
PGSC0003DMT400029241	Potato	cytosol	59.07	57.49
Solyc10g005520.2.1	Tomato	cytosol	59.07	57.38
CDX81759	Canola	cytosol	55.06	53.48
CDY52844	Canola	cytosol	54.85	53.39
Bra026724.1-P	Field mustard	nucleus	54.43	53.09
EER99761	Sorghum	cytosol	54.85	51.79
AT1G16280.1	Thale cress	nucleus	53.38	51.53
Zm00001d022246_P001	Maize	cytosol	54.43	49.62
TraesCS2A01G154800.1	Wheat	cytosol	53.38	49.61
TraesCS2B01G179900.1	Wheat	cytosol	53.16	49.32
TraesCS2D01G160100.1	Wheat	cytosol	52.95	49.22
Os07t0633500-00	Rice	nucleus	41.56	48.88
KRH43700	Soybean	cytosol	56.33	45.56
KRH13749	Soybean	cytosol, plastid	55.91	44.84
HORVU2Hr1G028120.2	Barley	plastid	41.98	40.04
GSMUA_Achr10P...	Banana	cytosol	24.26	22.24
GSMUA_Achr8P34380_001	Banana	cytosol	33.54	21.87
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	24.05	20.43
GSMUA_Achr3P14380_001	Banana	cytosol	19.2	20.36
GSMUA_Achr7P18160_001	Banana	nucleus	21.52	17.47
GSMUA_Achr8P01870_001	Banana	cytosol	22.78	16.59
GSMUA_Achr8P12970_001	Banana	nucleus	26.79	16.58
GSMUA_Achr10P...	Banana	mitochondrion	25.95	16.25
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	23.84	15.4
GSMUA_Achr8P04210_001	Banana	cytosol	23.63	15.14
GSMUA_Achr5P10150_001	Banana	nucleus	23.63	14.55
GSMUA_Achr9P14580_001	Banana	nucleus	23.42	13.52

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009553	GO:GO:0009561	GO:GO:0009791	GO:GO:0009987	GO:GO:0016787
GO:GO:0090406	EnsemblPlantsGene:GSMUA_Achr5G09910_001	EnsemblPlants:GSMUA_Achr5P09910_001	EnsemblPlants:GSMUA_Achr5T09910_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0SX70	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF552	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002948D96	SEG:seg	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 36 [Source:GMGC_GENE;Acc:GSMUA_Achr5G09910_001]

Coordinates

chr5:+:7094419..7100764

Molecular Weight (calculated)

53268.9 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.259

Length

474 amino acids

Sequence
(BLAST)

001: MADESSEPQP FRLFSSSARK PKPPPPTLRP HRSDPTCSNI DRGDAEADGN DSFADLGLSQ WAIDTCRELR MERPTPVQSR CIPRILAGDD VLGIAQTGSG
101: KTAAFALPIL HRLAEDPYGE DPDIPAVFSK TKVGTFTSLE KSCNVLYGDI LSVNNPYGSL EMFLVLDEAD RVLDVGFEEE LRVIFKCLPK SRQTLLFSAT
201: ITDELRALLE ISQNRSYFYE AYEGFKTVDS LEQKFIFIPK NVKDLYLFHI LSNLEEKNIR SVIVFVSTCR NCHLLSLLLE ELDQAAVALH SHKSQSLRLS
301: ALNRFKSGQV SILVATDVAS RGLDIPTVDL VINYDVPRYA RDYVHRVGRT ARAGRGGLSI SFVTQNDVDL IHEIEAIIGK QLTEYECEEK TVLEDITKVY
401: KARRVAIMKM IDDGFEEKAQ ARKKQKLKTL TEKGLLKKRK RYHYNSLCIP TLFCSLLQSV GDVACELGLH DQEN

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.