Factsheet for GSMUA_Achr10P29900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	86.85	80.47
VIT_17s0000g04310.t01	Wine grape	cytosol	79.11	74.36
PGSC0003DMT400063252	Potato	nucleus	75.24	68.73
Solyc03g114370.2.1	Tomato	nucleus	75.05	68.55
KRH62970	Soybean	nucleus	70.79	67.53
KRH03838	Soybean	nucleus	74.85	67.3
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	64.22	66.8
KRH56711	Soybean	nucleus	73.89	66.78
TraesCS5A01G114200.1	Wheat	nucleus	74.47	66.38
TraesCS5D01G127000.1	Wheat	nucleus	74.27	66.21
TraesCS5B01G120400.1	Wheat	nucleus	74.08	66.03
KRH54795	Soybean	nucleus	68.86	65.08
Os03t0802700-01	Rice	nucleus	73.69	64.58
EER90714	Sorghum	nucleus	74.47	61.8
TraesCS6D01G292400.1	Wheat	nucleus	65.76	61.48
TraesCS6A01G312900.1	Wheat	nucleus	65.76	61.48
TraesCS6B01G342900.1	Wheat	nucleus	64.6	61.17
TraesCS5A01G042300.1	Wheat	nucleus	67.5	60.59
TraesCS6A01G356000.1	Wheat	nucleus	66.73	60.21
Bra022336.1-P	Field mustard	nucleus	65.18	59.33
CDX92251	Canola	nucleus	65.18	59.23
TraesCS5D01G050600.1	Wheat	nucleus	63.83	59.03
CDX99342	Canola	nucleus	64.6	58.8
Bra037574.1-P	Field mustard	nucleus	64.22	58.66
Os06t0535100-00	Rice	nucleus	65.96	58.59
CDY18530	Canola	nucleus	64.22	58.45
TraesCS7B01G213800.1	Wheat	nucleus	34.82	58.25
CDX82336	Canola	nucleus	64.22	57.94
TraesCS7A01G313300.1	Wheat	nucleus	34.62	57.93
AT3G18600.1	Thale cress	nucleus	63.64	57.92
CDX95512	Canola	nucleus	63.83	57.89
TraesCS7D01G309800.1	Wheat	nucleus	34.82	57.69
Zm00001d013056_P001	Maize	nucleus	72.73	57.32
CDX75974	Canola	nucleus	64.22	57.04
HORVU5Hr1G010160.3	Barley	cytosol	66.34	56.98
OQU76528	Sorghum	nucleus	65.57	56.59
Zm00001d023501_P001	Maize	nucleus	64.99	55.72
CDY36514	Canola	nucleus	62.28	55.23
Bra024428.1-P	Field mustard	nucleus	62.67	54.82
Bra001713.1-P	Field mustard	nucleus	64.22	54.79
CDY08740	Canola	nucleus	62.67	54.55
Zm00001d000431_P001	Maize	plastid	50.48	53.7
KXG37786	Sorghum	nucleus	45.65	52.1
AT5G65900.1	Thale cress	nucleus	60.93	49.76
GSMUA_Achr3P14380_001	Banana	cytosol	25.92	29.98
GSMUA_Achr7P18160_001	Banana	nucleus	33.85	29.97
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	37.72	26.57
GSMUA_Achr5P09910_001	Banana	nucleus	22.24	24.26
GSMUA_Achr8P01870_001	Banana	cytosol	30.37	24.12
GSMUA_Achr8P34380_001	Banana	cytosol	28.63	20.36
GSMUA_Achr8P04210_001	Banana	cytosol	29.01	20.27
GSMUA_Achr10P...	Banana	mitochondrion	29.21	19.95
GSMUA_Achr8P12970_001	Banana	nucleus	25.34	17.1
GSMUA_Achr9P14580_001	Banana	nucleus	25.73	16.2
GSMUA_Achr5P10150_001	Banana	nucleus	22.24	14.94

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr10G29900_001	EnsemblPlants:GSMUA_Achr10P29900_001	EnsemblPlants:GSMUA_Achr10T29900_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0RML4	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0002958F4B	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 27 [Source:GMGC_GENE;Acc:GSMUA_Achr10G29900_001]

Coordinates

chr10:+:32221387..32228224

Molecular Weight (calculated)

58250.7 Da

IEP (calculated)

9.668

GRAVY (calculated)

-0.338

Length

517 amino acids

Sequence
(BLAST)

001: MDGDQVGDGA EMTAPAVKKK KKDYGILTSE SFSRLPISEL TMKAIQEMGF ENMTQIQSRA IPPLLEGKEV MGAARTGSGK TLAFLIPAVE LLHNIHFMPR
101: NGTGIIIICP TRELAIQTHA VAKDLLKYHS QTLGLVIGGA GRKGEAEHLA KGVNLLVATP GRLLDHLQNT KGFIYKNLMF LIIDEADRIL EANFEEDMKQ
201: IFKRLPKARQ TALFTATQTK QVEDFACLSF KEKPIYVGVD DGRSKVTVEG LQQGYCVVPS NKRFMVLYAF LKRNLSKKIM VFFSSCNSVK YHSELLRYIQ
301: IDCLDIHGKQ KQQKRTTTFF DFCKAEKGIL LCTDVAARGL DIPAVDWIVQ YDPPDEPKEY IHRVGRTARG EGGKGNALLF LLPEELQFLL YLKEAKVPVK
401: EYEFNEKKVP NLQSHLEKIV GENYYLSQSA KDAYRSYILA YNSHSMKNVF NVHHLNLKDV AASFCFSSPP KVNLDLESSA SKFRKKMRKT EGSRHGISAS
501: NPYGKQKGDD KRQFARY

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.