Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92251 | Canola | nucleus | 97.01 | 96.84 |
| CDX95512 | Canola | nucleus | 93.66 | 93.33 |
| CDX82336 | Canola | nucleus | 93.84 | 93.02 |
| CDY18530 | Canola | nucleus | 92.25 | 92.25 |
| CDX75974 | Canola | nucleus | 93.84 | 91.58 |
| AT3G18600.1 | Thale cress | nucleus | 86.62 | 86.62 |
| PGSC0003DMT400063252 | Potato | nucleus | 65.67 | 65.9 |
| VIT_17s0000g04310.t01 | Wine grape | cytosol | 63.56 | 65.64 |
| Solyc03g114370.2.1 | Tomato | nucleus | 65.14 | 65.37 |
| GSMUA_Achr10P... | Banana | cytosol | 58.8 | 64.6 |
| KRH62970 | Soybean | nucleus | 61.27 | 64.21 |
| KRH03838 | Soybean | nucleus | 63.73 | 62.96 |
| KRH54795 | Soybean | nucleus | 60.56 | 62.89 |
| KRH56711 | Soybean | nucleus | 63.03 | 62.59 |
| CDY36514 | Canola | nucleus | 59.86 | 58.32 |
| CDY08740 | Canola | nucleus | 60.21 | 57.58 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 49.65 | 56.74 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 54.75 | 55.73 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 56.69 | 55.52 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 56.69 | 55.52 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 56.69 | 55.52 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 53.52 | 54.97 |
| Os03t0802700-01 | Rice | nucleus | 56.51 | 54.41 |
| EER90714 | Sorghum | nucleus | 59.51 | 54.25 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 52.82 | 54.25 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 51.76 | 53.85 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 53.35 | 52.6 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 50.7 | 51.52 |
| Os06t0535100-00 | Rice | nucleus | 52.64 | 51.37 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 51.76 | 51.31 |
| OQU76528 | Sorghum | nucleus | 54.05 | 51.25 |
| Zm00001d013056_P001 | Maize | nucleus | 58.8 | 50.91 |
| KXG37786 | Sorghum | nucleus | 40.32 | 50.55 |
| Zm00001d000431_P001 | Maize | plastid | 42.96 | 50.21 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 52.82 | 49.83 |
| Zm00001d023501_P001 | Maize | nucleus | 51.94 | 48.92 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 24.82 | 45.63 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 24.82 | 45.63 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 24.65 | 44.87 |
| CDY42845 | Canola | cytosol | 26.23 | 33.18 |
| CDY47007 | Canola | cytosol | 26.06 | 32.96 |
| CDX96202 | Canola | cytosol | 14.26 | 29.14 |
| CDX81759 | Canola | cytosol | 24.47 | 28.48 |
| CDY52844 | Canola | cytosol | 24.3 | 28.34 |
| CDY17287 | Canola | nucleus | 31.69 | 27.52 |
| CDY40740 | Canola | cytosol | 26.06 | 27.36 |
| CDX70149 | Canola | nucleus | 27.99 | 26.59 |
| CDY14112 | Canola | cytosol | 27.64 | 26.43 |
| CDY04952 | Canola | nucleus | 27.64 | 26.43 |
| CDX79974 | Canola | nucleus | 31.87 | 26.31 |
| CDY44780 | Canola | mitochondrion | 26.58 | 26.12 |
| CDY23886 | Canola | plasma membrane | 31.69 | 25.68 |
| CDY41525 | Canola | mitochondrion | 26.58 | 21.24 |
| CDX84428 | Canola | mitochondrion | 26.41 | 21.22 |
| CDY49890 | Canola | mitochondrion | 25.53 | 18.59 |
| CDY45370 | Canola | mitochondrion | 25.53 | 18.54 |
| CDY40519 | Canola | nucleus | 23.77 | 17.81 |
| CDX69933 | Canola | cytosol | 4.23 | 17.65 |
| CDX79187 | Canola | cytosol | 25.0 | 16.75 |
| CDX68066 | Canola | cytosol | 25.0 | 16.67 |
| CDY50846 | Canola | nucleus | 23.59 | 15.97 |
| CDY53643 | Canola | nucleus | 23.59 | 15.88 |
| CDY52719 | Canola | nucleus, plastid | 22.36 | 15.32 |
| CDY34979 | Canola | nucleus, plastid | 22.18 | 15.14 |
| CDY32273 | Canola | nucleus | 22.01 | 13.69 |
| CDY21554 | Canola | mitochondrion | 26.76 | 11.18 |
| CDX69935 | Canola | mitochondrion | 27.11 | 11.17 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078EE48 | EnsemblPlants:CDX99342 | ProteinID:CDX99342 | ProteinID:CDX99342.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00107639001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF305 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 |
| UniParc:UPI0004EF48EF | SEG:seg | : | : | : | : |
Description
BnaC05g34570D
Coordinates
chrLK031909:+:1246608..1250307
Molecular Weight (calculated)
64093.6 Da
IEP (calculated)
9.841
GRAVY (calculated)
-0.492
Length
568 amino acids
Sequence
(BLAST)
(BLAST)
001: MVELEKKSSD ELKKRVRKRN RGKKNDQQKA EEEEEETHKV EENADGIQNK MEKKVKKVKK QQGRGKTDED EEEEKKMVVV GKGIMTNETF ESLDLSEQTF
101: QAIKAMGFEH MTQIQAGSIP PLLEGKDVLG AARTGSGKTL AFLIPAVELL FKEHFSPRNR TGVIVICPTR ELAIQTKNVA EELVKHHSLT VSMVIGGNNR
201: RTEAQRIANG SNLLIATPGR LLDHLQHTKG FIYKHLKCLV IDEADRILEE NFEEDMNKIL KILPKTRQTA LFSATQTSKV QDLARVSLTS PVLVDVDDGR
301: RKVTNEGLEQ GYCVVPSEKR LLLLISFLKK NLNKKIMVFF STCKSVQFHA EIMKLINVES CDIHGGLDQN RRTKTFFDFM KAEKGILLCT DVAARGLDIP
401: AVDWIIQYDP PDKPTEYIHR VGRTARGEGA KGKALLVLIP EELQFIRYLK AAKVPVKELE FNEKKLLNVR SALEKYVASD YNLNKTAKDA YRAYIAAYNS
501: HSLKDIFNVH RLDLQAVALS FCFSSPPKVN LNIESGAGKV RKARNQQARN GFSPYSPYGK VRSTPKEA
101: QAIKAMGFEH MTQIQAGSIP PLLEGKDVLG AARTGSGKTL AFLIPAVELL FKEHFSPRNR TGVIVICPTR ELAIQTKNVA EELVKHHSLT VSMVIGGNNR
201: RTEAQRIANG SNLLIATPGR LLDHLQHTKG FIYKHLKCLV IDEADRILEE NFEEDMNKIL KILPKTRQTA LFSATQTSKV QDLARVSLTS PVLVDVDDGR
301: RKVTNEGLEQ GYCVVPSEKR LLLLISFLKK NLNKKIMVFF STCKSVQFHA EIMKLINVES CDIHGGLDQN RRTKTFFDFM KAEKGILLCT DVAARGLDIP
401: AVDWIIQYDP PDKPTEYIHR VGRTARGEGA KGKALLVLIP EELQFIRYLK AAKVPVKELE FNEKKLLNVR SALEKYVASD YNLNKTAKDA YRAYIAAYNS
501: HSLKDIFNVH RLDLQAVALS FCFSSPPKVN LNIESGAGKV RKARNQQARN GFSPYSPYGK VRSTPKEA
001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
Arabidopsis Description
RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.