Factsheet for HORVU4Hr1G000640.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G356000.1	Wheat	nucleus	95.37	82.72
TraesCS6D01G292400.1	Wheat	nucleus	84.51	75.95
TraesCS6B01G342900.1	Wheat	nucleus	81.89	74.54
OQU76528	Sorghum	nucleus	84.71	70.28
Zm00001d023501_P001	Maize	nucleus	83.7	68.99
HORVU5Hr1G010160.3	Barley	cytosol	83.3	68.77
GSMUA_Achr10P...	Banana	cytosol	66.8	64.22
Os06t0535100-00	Rice	nucleus	72.84	62.2
KRH62970	Soybean	nucleus	61.37	56.27
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	63.18	56.27
VIT_17s0000g04310.t01	Wine grape	cytosol	61.97	56.0
KRH54795	Soybean	nucleus	60.97	55.39
Solyc03g114370.2.1	Tomato	nucleus	61.57	54.06
KRH03838	Soybean	nucleus	61.97	53.57
KRH56711	Soybean	nucleus	61.57	53.5
PGSC0003DMT400063252	Potato	nucleus	60.76	53.36
CDX99342	Canola	nucleus	56.74	49.65
Bra022336.1-P	Field mustard	nucleus	56.74	49.65
Bra037574.1-P	Field mustard	nucleus	56.54	49.65
CDX92251	Canola	nucleus	56.74	49.56
CDY18530	Canola	nucleus	56.54	49.47
CDX82336	Canola	nucleus	56.54	49.04
CDX95512	Canola	nucleus	56.14	48.95
CDX75974	Canola	nucleus	57.14	48.8
AT3G18600.1	Thale cress	nucleus	55.73	48.77
CDY36514	Canola	nucleus	54.93	46.83
Bra001713.1-P	Field mustard	nucleus	56.94	46.7
Bra024428.1-P	Field mustard	nucleus	55.13	46.36
CDY08740	Canola	nucleus	55.13	46.13
AT5G65900.1	Thale cress	nucleus	54.33	42.65
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	28.57	26.39
HORVU1Hr1G004510.5	Barley	plastid	33.2	25.0
HORVU2Hr1G022490.2	Barley	nucleus	23.74	23.94
HORVU3Hr1G018130.7	Barley	plastid	29.38	21.57
HORVU6Hr1G020570.1	Barley	plastid	24.35	21.38
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	27.77	18.16
HORVU2Hr1G028120.2	Barley	plastid	17.71	17.71
HORVU5Hr1G093160.3	Barley	nucleus	25.96	15.52
HORVU2Hr1G088480.2	Barley	nucleus, plastid	23.54	13.48
HORVU4Hr1G083970.6	Barley	nucleus	17.1	9.74

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287MW21	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:HORVU4Hr1G000640	EnsemblPlants:HORVU4Hr1G000640.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	UniParc:UPI000B46C888	SEG:seg	:	:	:

Description

RNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A287MW21]

Coordinates

chrchr4H:+:1118767..1122596

Molecular Weight (calculated)

56339.2 Da

IEP (calculated)

9.971

GRAVY (calculated)

-0.386

Length

497 amino acids

Sequence
(BLAST)

001: KEKKKKKQSD DQEGKGGGIL TCKLFSDLYM SDLTAKAITE MNYTHLTQIQ ARSIPHLMVG HDVLGSARTG SGKTLAFLIP AIQLLHNAHY TPRNGTGVII
101: VCPTRELAIQ THNVAKELMK YHSQTIGYVI GGTNMKSEAN QLVKGVNLLV ATPGRLLDHL RSTSNFNYKR LQCLIIDEAD RILEQNFEED MKQIFRRLPR
201: DRQTVLFSAT QTQKVEDFAK FTFGNNEERQ RKLVYVGVDD SELKPTVEGL QQGYCVIPSE KRFLVLYAFL KRMQTKQDVK VMVFFSSCSS VKFHAEFLNF
301: LGIECYDIHG QLKQQKRTTT FFQFSKMNKG ILLCTNVAAR GLDIPNVDYI HRVGRTARGD KGKGRALLFL LPEEMKLLIY LQASKISLTE YAFSEKHVPK
401: TQSLLESIVG GNYFLNQSAK EAYRSYILAY NSHSMKDIFD VHQLDLKKVA ASFCFDNPPK VNLDLESSAS RHRKMRKVEG GKRHGISPSD PYGRRGS

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.