Factsheet for HORVU2Hr1G028120.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G179900.1	Wheat	cytosol	77.06	74.95
TraesCS2D01G160100.1	Wheat	cytosol	76.06	74.12
TraesCS2A01G154800.1	Wheat	cytosol	75.86	73.92
EER99761	Sorghum	cytosol	59.36	58.76
Os07t0633500-00	Rice	nucleus	46.68	57.57
Zm00001d022246_P001	Maize	cytosol	57.95	55.38
VIT_19s0085g00510.t01	Wine grape	cytosol	43.46	44.17
PGSC0003DMT400029241	Potato	cytosol	42.86	43.74
Solyc10g005520.2.1	Tomato	cytosol	42.66	43.44
GSMUA_Achr5P09910_001	Banana	nucleus	40.04	41.98
CDY52844	Canola	cytosol	40.64	41.48
Bra026724.1-P	Field mustard	nucleus	40.44	41.36
CDX81759	Canola	cytosol	40.24	40.98
AT1G16280.1	Thale cress	nucleus	38.83	39.31
KRH43700	Soybean	cytosol	38.63	32.76
KRH13749	Soybean	cytosol, plastid	37.83	31.81
HORVU2Hr1G022490.2	Barley	nucleus	24.55	24.75
HORVU6Hr1G020570.1	Barley	plastid	25.35	22.26
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	17.71	17.71
HORVU5Hr1G010160.3	Barley	cytosol	20.32	16.78
HORVU4Hr1G083970.6	Barley	nucleus	29.38	16.72
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	17.71	16.36
HORVU1Hr1G004510.5	Barley	plastid	17.1	12.88
HORVU3Hr1G018130.7	Barley	plastid	16.9	12.41
HORVU5Hr1G093160.3	Barley	nucleus	20.72	12.39
HORVU2Hr1G088480.2	Barley	nucleus, plastid	20.72	11.87
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	16.9	11.05

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287HHM6	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009553	GO:GO:0009561	GO:GO:0009791	GO:GO:0009987
GO:GO:0016787	GO:GO:0090406	EnsemblPlantsGene:HORVU2Hr1G028120	EnsemblPlants:HORVU2Hr1G028120.2	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF552	InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B488867	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:-:94196600..94201102

Molecular Weight (calculated)

46900.9 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.492

Length

497 amino acids

Sequence
(BLAST)

001: CRRASPAPPP PCPTPPLPPP APPRSTVPME VDGEARPFLL FSKPKSNRRT EPQPQVEAQP KPPKPDPTPA VQTDHGDSDS GGSGSDSDSD XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG LRCLAAIGGF DSLAQAKGLA RRPHVVVATP
201: GRIATLIKND PDLAKVFART KFLVLDEADR VVDSNFEEDL KVIFDCLPKK RQTFLFSATM SDNLRSLLEL SGSKSYFFEA YEGFKTVENL KQQYIHIPPD
301: GKELHLLYLL SKMKEDNIRS AIVFVSTCRT CQYLDFVLQE LGRPAVSLHS HKAQSHRLSA LHRFKSGQVP VLIATDVASR GLDIQTVDLV INYDIPRFPR
401: DYIHRVGRTA RATRRGLSIS FVTQRDICLL HEIEDDVGNR FGAYECDDKE VTKDITKVFK ARRLANMRMA DEGHEDKVQD RKDQKKRDQA RKRKHDE

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.