Factsheet for PGSC0003DMT400029241

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005520.2.1	Tomato	cytosol	97.54	97.34
VIT_19s0085g00510.t01	Wine grape	cytosol	77.82	77.51
CDY52844	Canola	cytosol	66.94	66.94
Bra026724.1-P	Field mustard	nucleus	66.53	66.67
CDX81759	Canola	cytosol	66.53	66.39
AT1G16280.1	Thale cress	nucleus	64.68	64.15
GSMUA_Achr5P09910_001	Banana	nucleus	57.49	59.07
EER99761	Sorghum	cytosol	58.11	56.37
Os07t0633500-00	Rice	nucleus	45.79	55.34
TraesCS2A01G154800.1	Wheat	cytosol	57.49	54.9
TraesCS2B01G179900.1	Wheat	cytosol	57.49	54.79
KRH43700	Soybean	cytosol	65.91	54.78
TraesCS2D01G160100.1	Wheat	cytosol	57.29	54.71
Zm00001d022246_P001	Maize	cytosol	57.91	54.23
KRH13749	Soybean	cytosol, plastid	65.09	53.64
HORVU2Hr1G028120.2	Barley	plastid	43.74	42.86
PGSC0003DMT400063252	Potato	nucleus	27.52	23.67
PGSC0003DMT400006154	Potato	nucleus	27.1	22.11
PGSC0003DMT400006153	Potato	nucleus	23.61	21.54
PGSC0003DMT400057606	Potato	nucleus	27.52	21.51
PGSC0003DMT400025551	Potato	nucleus	31.21	20.4
PGSC0003DMT400003801	Potato	nucleus	31.62	19.32
PGSC0003DMT400057202	Potato	nucleus	27.72	17.88
PGSC0003DMT400000611	Potato	mitochondrion	28.34	15.84
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	23.41	14.14

Protein Annotations

EntrezGene:102589238	MapMan:17.1.3.2.1.15	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009553	GO:GO:0009561	GO:GO:0009791	GO:GO:0009987
GO:GO:0016787	GO:GO:0090406	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M1ASG6	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400011245
PGSC:PGSC0003DMG400011245	EnsemblPlants:PGSC0003DMT400029241	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF552	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00029499C4	RefSeq:XP_006352587.1	SEG:seg	:	:

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400011245]

Coordinates

chr10:-:598446..604916

Molecular Weight (calculated)

54406.0 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.227

Length

487 amino acids

Sequence
(BLAST)

001: MEEEVQVDQN FPLFSRKTKP ATRKPVPAPT SIEETPKQLD KETNSGPTPS HITFSDLGLA GWAVQTCNEL GMKKPTPVQY HCIPRILSGQ DVLGLAQTGS
101: GKTAAFALPI LHRLAEDPYG VSCLVVTPTR ELAFQLAEQF RALGSCLNLR CAVVVGGMDM ITQTKTLMQR PHVVIATPGR IKVLIEQNPD IPPVFSRTKF
201: LVLDEADRVL DVGFEEELRA IFECLPKNRQ TLLFSATMTS NLQTLLELSA NKAYFYEAYE GFKTVESLKQ QYIFIPKNVK DVYLQYILSK IKDIGVRSAI
301: IFVSTCRSCQ LLGLLLEELE IDAAALHSYK SQSLRLSALH KFKSGQVPIL VATDVASRGL DIPTVDLVVN YDIPRYPQDY VHRVGRTARA GRGGLAVSFV
401: TQNDVDLIHE IEAVLGKQLE KFDCKENEVL DDISKVYKAK RVASMKMMDD GFEEKAASRK AQKQKMQNER KGRNKKQKRG VTKDIEV

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.