Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g090740.2.1 | Tomato | nucleus | 97.87 | 97.62 |
| VIT_05s0049g02360.t01 | Wine grape | nucleus | 70.77 | 71.57 |
| KRH48208 | Soybean | nucleus | 69.51 | 68.4 |
| Bra021205.1-P | Field mustard | mitochondrion, nucleus, plastid | 53.45 | 67.73 |
| KRH65117 | Soybean | plastid | 65.12 | 62.99 |
| GSMUA_Achr5P10150_001 | Banana | nucleus | 56.96 | 58.96 |
| CDY52719 | Canola | nucleus, plastid | 60.85 | 58.5 |
| AT3G16840.2 | Thale cress | nucleus | 60.23 | 58.04 |
| CDY34979 | Canola | nucleus, plastid | 60.48 | 57.93 |
| OQU81941 | Sorghum | nucleus | 58.72 | 55.58 |
| TraesCS2B01G384300.1 | Wheat | nucleus | 57.97 | 55.33 |
| Os04t0510400-01 | Rice | nucleus | 57.59 | 55.17 |
| TraesCS2D01G363700.1 | Wheat | nucleus | 57.84 | 55.14 |
| Zm00001d003031_P002 | Maize | nucleus | 58.09 | 54.73 |
| TraesCS2A01G366700.1 | Wheat | nucleus | 57.84 | 54.62 |
| HORVU2Hr1G088480.2 | Barley | nucleus, plastid | 58.22 | 53.46 |
| PGSC0003DMT400029241 | Potato | cytosol | 19.32 | 31.62 |
| PGSC0003DMT400063252 | Potato | nucleus | 16.81 | 23.67 |
| PGSC0003DMT400006154 | Potato | nucleus | 17.06 | 22.78 |
| PGSC0003DMT400006153 | Potato | nucleus | 14.81 | 22.1 |
| PGSC0003DMT400025551 | Potato | nucleus | 20.45 | 21.88 |
| PGSC0003DMT400057606 | Potato | nucleus | 16.31 | 20.87 |
| PGSC0003DMT400057202 | Potato | nucleus | 16.94 | 17.88 |
| PGSC0003DMT400010896 | Potato | cytosol, nucleus, plastid | 17.57 | 17.37 |
| PGSC0003DMT400000611 | Potato | mitochondrion | 18.07 | 16.53 |
Protein Annotations
| EntrezGene:102605472 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| UniProt:M0ZMC3 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | EnsemblPlantsGene:PGSC0003DMG400001506 | PGSC:PGSC0003DMG400001506 |
| EnsemblPlants:PGSC0003DMT400003801 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF91 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI000295892D | RefSeq:XP_006340873.1 | SEG:seg | : | : | : |
Description
DEAD-box ATP-dependent RNA helicase 13 [Source:PGSC_GENE;Acc:PGSC0003DMG400001506]
Coordinates
chr9:-:57162917..57172504
Molecular Weight (calculated)
90100.6 Da
IEP (calculated)
9.600
GRAVY (calculated)
-0.767
Length
797 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQISDKKR PKKTKKRSRV ESVEFERINS LNWNPTLTEK DDDFSFLIGS NELEGGFLCL EEIDESEYNL GIAKSTGGSE EKGKTKPKKQ KVDTKNEELN
101: GEAKGESKEE IEEVGKETKQ KKKKKKKKKK DKINKDAVNE AEGNEESPAV TDGNDDQEQD SVDETEYYAW NELRLHPLLM KSIYALKFKE PTPIQKACIP
201: AGAHQGKDVV GAAETGSGKT LAFGLPILQR LLEEREKAER QLPENGELDE KVASAGLLRA LIITPTRELA LQVTDHLKEA ARHSNFRVVP IVGGMSSEKQ
301: ERLLKTRPEI VVGTPGRLWE LMSGGDTHLV ELHSLSFFVL DEADRMIENG HFHELQSIVD MLPMASKSTD DDSQKSQNCE TVSSVQRKKR QTFVFSATIA
401: LSADFRKKLK RGSQKSKAND ELNSIETLSE RAGMRADAAI IDLTNASILA NKLEESFIDC REEDKDGYLY YILSVHGQGR TIVFCTSIAA LRHISSLLRI
501: LGVNVWTLHA QMQQRARLKA IDRFRGHEHG ILIATDVAAR GLDIPGVRTV IHYQLPHSAE VYVHRSGRTA RAHSDGCSIA LITPNDTSKF AALCKSFSKD
601: NFQRFPLEMS YMPEVMKRLS LARQIDKISR KDSQDKAKKN WLERSAELME LDLEDNDSEE ERVNNHKRKK ATSAQLTNLQ EELKSLLSRP LQPKTFSKRY
701: LAGAGVSPLL QNQLEELARQ KNPNNSGDIR KKMIVIGQDC VEPLQALRSA GPETKLNLKD MAEKRRDITE LRRKRKETKK RLREQRRKQK KKLQGKE
101: GEAKGESKEE IEEVGKETKQ KKKKKKKKKK DKINKDAVNE AEGNEESPAV TDGNDDQEQD SVDETEYYAW NELRLHPLLM KSIYALKFKE PTPIQKACIP
201: AGAHQGKDVV GAAETGSGKT LAFGLPILQR LLEEREKAER QLPENGELDE KVASAGLLRA LIITPTRELA LQVTDHLKEA ARHSNFRVVP IVGGMSSEKQ
301: ERLLKTRPEI VVGTPGRLWE LMSGGDTHLV ELHSLSFFVL DEADRMIENG HFHELQSIVD MLPMASKSTD DDSQKSQNCE TVSSVQRKKR QTFVFSATIA
401: LSADFRKKLK RGSQKSKAND ELNSIETLSE RAGMRADAAI IDLTNASILA NKLEESFIDC REEDKDGYLY YILSVHGQGR TIVFCTSIAA LRHISSLLRI
501: LGVNVWTLHA QMQQRARLKA IDRFRGHEHG ILIATDVAAR GLDIPGVRTV IHYQLPHSAE VYVHRSGRTA RAHSDGCSIA LITPNDTSKF AALCKSFSKD
601: NFQRFPLEMS YMPEVMKRLS LARQIDKISR KDSQDKAKKN WLERSAELME LDLEDNDSEE ERVNNHKRKK ATSAQLTNLQ EELKSLLSRP LQPKTFSKRY
701: LAGAGVSPLL QNQLEELARQ KNPNNSGDIR KKMIVIGQDC VEPLQALRSA GPETKLNLKD MAEKRRDITE LRRKRKETKK RLREQRRKQK KKLQGKE
001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL
201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE
301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS
401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH
501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG
601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL
701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK
801: KRKEEKIGRR DQRRNQKKQR KLMASS
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL
201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE
301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS
401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH
501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG
601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL
701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK
801: KRKEEKIGRR DQRRNQKKQR KLMASS
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.