Factsheet for Bra021205.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34979	Canola	nucleus, plastid	99.68	75.36
AT3G16840.2	Thale cress	nucleus	83.78	63.72
VIT_05s0049g02360.t01	Wine grape	nucleus	67.41	53.81
PGSC0003DMT400003801	Potato	nucleus	67.73	53.45
Solyc09g090740.2.1	Tomato	nucleus	67.41	53.07
KRH48208	Soybean	nucleus	65.5	50.86
KRH65117	Soybean	plastid	62.32	47.57
GSMUA_Achr5P10150_001	Banana	nucleus	57.23	46.75
OQU81941	Sorghum	nucleus	61.53	45.96
Os04t0510400-01	Rice	nucleus	60.1	45.43
TraesCS2B01G384300.1	Wheat	nucleus	60.1	45.27
TraesCS2D01G363700.1	Wheat	nucleus	59.94	45.1
Zm00001d003031_P002	Maize	nucleus	60.57	45.04
TraesCS2A01G366700.1	Wheat	nucleus	60.1	44.79
HORVU2Hr1G088480.2	Barley	nucleus, plastid	60.41	43.78
Bra029342.1-P	Field mustard	cytosol	21.46	29.87
Bra026724.1-P	Field mustard	nucleus	22.1	28.6
Bra028652.1-P	Field mustard	nucleus	20.35	23.66
Bra009356.1-P	Field mustard	cytosol	20.19	22.64
Bra037574.1-P	Field mustard	nucleus	19.71	21.91
Bra028757.1-P	Field mustard	nucleus	20.35	21.55
Bra009114.1-P	Field mustard	nucleus	20.35	21.51
Bra024428.1-P	Field mustard	nucleus	20.19	21.49
Bra022336.1-P	Field mustard	nucleus	19.4	21.48
Bra004584.1-P	Field mustard	nucleus	20.51	21.01
Bra001713.1-P	Field mustard	nucleus	19.4	20.13
Bra002946.1-P	Field mustard	nucleus	20.67	17.47
Bra009355.1-P	Field mustard	mitochondrion, plastid	20.51	16.93
Bra038650.1-P	Field mustard	mitochondrion	19.87	16.82
Bra040743.1-P	Field mustard	nucleus	23.37	16.82
Bra003691.1-P	Field mustard	cytosol	22.1	16.31
Bra027808.1-P	Field mustard	mitochondrion	19.24	15.49
Bra038492.1-P	Field mustard	nucleus	21.78	15.09

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra021205	EnsemblPlants:Bra021205.1	EnsemblPlants:Bra021205.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M4DXF9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF91
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00025439DB
SEG:seg	:	:	:	:	:

Description

AT3G16840 (E=1e-263) | ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding

Coordinates

chrA01:+:23358484..23361846

Molecular Weight (calculated)

70576.8 Da

IEP (calculated)

10.287

GRAVY (calculated)

-0.463

Length

629 amino acids

Sequence
(BLAST)

001: MRLHPLLMKS IYHLGFKEPT KIQKACFTVA AFQGKDVIGA AETGSGKTLA FGLPILQRLL DEREKVGKLF ALKGEEAQKY SADGYLRALI ITPTRELALQ
101: VTEHLKNAAK NLGVRVVPIV GGMSSAKQER LLKGKPEIVV GTPGRLWELM SAGEKHLVEL QCLSFFVLDE ADRMVEGGHF RELQSIIDML PVTDKPNEGK
201: TQSSDTVSDG PKKKRQTFVF SATIALSSDF RKKLKRGSSK SKQSSSGEVN SIEVLSERAG MRDSVAIVDL TTAAILAPKI EESFIRCEEE DKDAYLYYLL
301: SVHGQGRTIV FCTSVAALRH ICALLKILGV DVCKLNADMK QQARLKAMDR FRSSENGVLV ATDVVARGID IKNVRTIIHY QLPHSAEVYV HRSGRTARAF
401: ADGCSIALIA PNDTSKFYTL CKSFSKESVK IFPLDSSLMP DVKKRLSLAR QIDQIERKGS RERVDRTWLE KHAELMELEL DEDESEEEKV DNVRQRKATS
501: AQLKKLKEEL SSLLSRPMQP KKFSDRYFAG RGMSPLLQNQ LAELTNQKQQ QQVASGGDKK RRKLVVVSQN CIEPLQALRD GSKEVMSMKG QSADRRRDIA
601: TLRKKKKEEK IGRRDQRRDQ KKKRKLMAS

Best Arabidopsis Sequence Match ( AT3G16840.2 )
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAAVS CDGDDTVEEQ VEEEEIPPEF SAWSSMRLHP
201: LLMKSIYRLD FKEPTKIQKA CFNVAAYQGK DVIGAAETGS GKTLAFGLPI LQRLLDEREK VGKLYALKGE EAQKYAADGY LRALIITPTR ELALQVTEHL
301: ENAAKNLSVK VVPIVGGMFS EKQERRLKEK PEIVVATPGR LWELMSAGEK HLVELHSLSF FVLDEADRMV ERGHFRELQS ILDLLPVTDK PNEGKTQTVK
401: SNDTVLNVPK KKRQTFVFSA TIALSSDFRK KLKRGSSKSK QSSSGEVNSI EVLSERAGMR DNVAIIDLTT TSILAPKIEE SFIKCEEKEK DAYLYYILSV
501: HGQGRTIVFC TSVTDLRHIS GLLKILGLDV CTLFSEMKQR ARLKSIDRFR ASENGILIAT DLVARGIDIK NVRTIIHYKL PHSAEVYVHR CGRTARAFAD
601: GCSIALIEPN ETSKFYTLCK SFSMESVKIF PLDNSYMPAV RKRLYLARQI YEIERKGSRE NADRTWLKKH AESMELELDD EESEEERVDN VRQRKATSAR
701: LNKLKEELST LLSHPMQPKK FSGRYFAGVG VSTLMQNQFV ELKKQKQAQM QIGGDIKRRK LVVINQNCIE PLQALRAGGN EMLKMKGQSA EKRRDIASLK
801: KKRKEEKIGR RDQRRNQKKQ RKLMASS

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.